WormBase Tree Display for Gene: WBGene00016943
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| WBGene00016943 | SMap | S_parent | Sequence | C55B7 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | acdh-1 | |||||||
| Sequence_name | C55B7.4 | ||||||||
| Molecular_name | C55B7.4a | ||||||||
| C55B7.4a.1 | |||||||||
| CE09015 | |||||||||
| C55B7.4b | |||||||||
| CE32840 | |||||||||
| C55B7.4b.1 | |||||||||
| C55B7.4b.2 | |||||||||
| Other_name | dod-12 | ||||||||
| CELE_C55B7.4 | Accession_evidence | NDB | BX284601 | ||||||
| Public_name | acdh-1 | ||||||||
| DB_info | Database | AceView | gene | 1H75 | |||||
| WormQTL | gene | WBGene00016943 | |||||||
| WormFlux | gene | WBGene00016943 | |||||||
| NDB | locus_tag | CELE_C55B7.4 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00016943|UniProtKB=H2KZG6 | |||||||
| family | PTHR43884 | ||||||||
| NCBI | gene | 172358 | |||||||
| RefSeq | protein | NM_001383261.2 | |||||||
| NM_001380557.1 | |||||||||
| TREEFAM | TREEFAM_ID | TF105055 | |||||||
| TrEMBL | UniProtAcc | H2KZG6 | |||||||
| Q8IAB6 | |||||||||
| UniProt_GCRP | UniProtAcc | H2KZG6 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:30:58 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 25 Aug 2004 14:33:45 | WBPerson1971 | Name_change | CGC_name | acdh-1 | ||||
| Other_name | dod-12 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | acdh | ||||||||
| Allele (22) | |||||||||
| Strain | WBStrain00032056 | ||||||||
| WBStrain00036246 | |||||||||
| WBStrain00036314 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00022255 | ||||||||
| 00022256 | |||||||||
| 00022257 | |||||||||
| 00022258 | |||||||||
| 00022259 | |||||||||
| 00022260 | |||||||||
| 00122446 | |||||||||
| 00122447 | |||||||||
| Contained_in_operon | CEOP1907 | ||||||||
| Ortholog (38) | |||||||||
| Paralog (22) | |||||||||
| Structured_description | Concise_description | acdh-1 encodes a short-chain acyl-CoA dehydrogenase; ACDH-1 is predicted to be a mitochondrial enzyme that catalyzes the first step of fatty acid beta-oxidation and thus plays a key role in energy production; steady-state acdh-1 mRNA levels are under the control of the MDT-15 mediator complex subunit; in addition, gene expression studies indicate that acdh-1 expression is upregulated in daf-2 mutant animals, but downregulated in fasted animals; loss of acdh-1 activity via RNAi can shorten lifespan. | Paper_evidence | WBPaper00005976 | |||||
| WBPaper00026800 | |||||||||
| WBPaper00027365 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 10 Aug 2006 00:00:00 | ||||||||
| Automated_description | Predicted to enable acyl-CoA dehydrogenase activity. Involved in defense response to Gram-negative bacterium and innate immune response. Predicted to be located in mitochondrion. Expressed in E lineage cell; hypodermis; and neurons. Is an ortholog of human ACADSB (acyl-CoA dehydrogenase short/branched chain). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C55B7.4a | |||||||
| C55B7.4b | |||||||||
| Corresponding_transcript | C55B7.4a.1 | ||||||||
| C55B7.4b.1 | |||||||||
| C55B7.4b.2 | |||||||||
| Other_sequence (19) | |||||||||
| Associated_feature | WBsf643373 | ||||||||
| WBsf643374 | |||||||||
| WBsf978997 | |||||||||
| WBsf217836 | |||||||||
| WBsf217837 | |||||||||
| WBsf217838 | |||||||||
| WBsf217839 | |||||||||
| WBsf217840 | |||||||||
| Experimental_info | RNAi_result (14) | ||||||||
| Expr_pattern (9) | |||||||||
| Drives_construct | WBCnstr00006161 | ||||||||
| WBCnstr00013727 | |||||||||
| WBCnstr00017529 | |||||||||
| WBCnstr00017596 | |||||||||
| WBCnstr00027688 | |||||||||
| Construct_product | WBCnstr00027688 | ||||||||
| Microarray_results (34) | |||||||||
| Expression_cluster (410) | |||||||||
| Interaction (112) | |||||||||
| Map_info | Map | I | Position | 1.16367 | Error | 0.004812 | |||
| Positive | Positive_clone | C55B7 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 5183 | |||||||
| 4359 | |||||||||
| 5614 | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00005976 | ||||||||
| WBPaper00026800 | |||||||||
| WBPaper00027024 | |||||||||
| WBPaper00027365 | |||||||||
| WBPaper00028482 | |||||||||
| WBPaper00033444 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00042204 | |||||||||
| WBPaper00042257 | |||||||||
| WBPaper00042258 | |||||||||
| WBPaper00042607 | |||||||||
| WBPaper00043021 | |||||||||
| WBPaper00044448 | |||||||||
| WBPaper00044854 | |||||||||
| WBPaper00047677 | |||||||||
| WBPaper00047680 | |||||||||
| WBPaper00049531 | |||||||||
| WBPaper00049812 | |||||||||
| WBPaper00051524 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00059839 | |||||||||
| WBPaper00060431 | |||||||||
| WBPaper00060459 | |||||||||
| WBPaper00061842 | |||||||||
| WBPaper00062388 | |||||||||
| WBPaper00063962 | |||||||||
| WBPaper00064105 | |||||||||
| WBPaper00064263 | |||||||||
| WBPaper00064291 | |||||||||
| WBPaper00064339 | |||||||||
| WBPaper00064539 | |||||||||
| WBPaper00064568 | |||||||||
| WBPaper00064634 | |||||||||
| WBPaper00065123 | |||||||||
| WBPaper00065140 | |||||||||
| WBPaper00065272 | |||||||||
| WBPaper00065288 | |||||||||
| WBPaper00065308 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
