WormBase Tree Display for Gene: WBGene00016943
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WBGene00016943 | SMap | S_parent | Sequence | C55B7 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | acdh-1 | |||||||
Sequence_name | C55B7.4 | ||||||||
Molecular_name | C55B7.4a | ||||||||
C55B7.4a.1 | |||||||||
CE09015 | |||||||||
C55B7.4b | |||||||||
CE32840 | |||||||||
C55B7.4b.1 | |||||||||
C55B7.4b.2 | |||||||||
Other_name | dod-12 | ||||||||
CELE_C55B7.4 | Accession_evidence | NDB | BX284601 | ||||||
Public_name | acdh-1 | ||||||||
DB_info | Database | AceView | gene | 1H75 | |||||
WormQTL | gene | WBGene00016943 | |||||||
WormFlux | gene | WBGene00016943 | |||||||
NDB | locus_tag | CELE_C55B7.4 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00016943|UniProtKB=H2KZG6 | |||||||
family | PTHR43884 | ||||||||
NCBI | gene | 172358 | |||||||
RefSeq | protein | NM_001383261.2 | |||||||
NM_001380557.1 | |||||||||
TREEFAM | TREEFAM_ID | TF105055 | |||||||
TrEMBL | UniProtAcc | H2KZG6 | |||||||
Q8IAB6 | |||||||||
UniProt_GCRP | UniProtAcc | H2KZG6 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 28 May 2004 13:30:58 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
2 | 25 Aug 2004 14:33:45 | WBPerson1971 | Name_change | CGC_name | acdh-1 | ||||
Other_name | dod-12 | ||||||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | acdh | ||||||||
Allele (22) | |||||||||
Strain | WBStrain00032056 | ||||||||
WBStrain00036246 | |||||||||
WBStrain00036314 | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00022255 | ||||||||
00022256 | |||||||||
00022257 | |||||||||
00022258 | |||||||||
00022259 | |||||||||
00022260 | |||||||||
00122446 | |||||||||
00122447 | |||||||||
Contained_in_operon | CEOP1907 | ||||||||
Ortholog (38) | |||||||||
Paralog (22) | |||||||||
Structured_description | Concise_description | acdh-1 encodes a short-chain acyl-CoA dehydrogenase; ACDH-1 is predicted to be a mitochondrial enzyme that catalyzes the first step of fatty acid beta-oxidation and thus plays a key role in energy production; steady-state acdh-1 mRNA levels are under the control of the MDT-15 mediator complex subunit; in addition, gene expression studies indicate that acdh-1 expression is upregulated in daf-2 mutant animals, but downregulated in fasted animals; loss of acdh-1 activity via RNAi can shorten lifespan. | Paper_evidence | WBPaper00005976 | |||||
WBPaper00026800 | |||||||||
WBPaper00027365 | |||||||||
Curator_confirmed | WBPerson1843 | ||||||||
Date_last_updated | 10 Aug 2006 00:00:00 | ||||||||
Automated_description | Predicted to enable acyl-CoA dehydrogenase activity. Involved in defense response to Gram-negative bacterium and innate immune response. Predicted to be located in mitochondrion. Expressed in E lineage cell; hypodermis; and neurons. Is an ortholog of human ACADSB (acyl-CoA dehydrogenase short/branched chain). | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | C55B7.4a | |||||||
C55B7.4b | |||||||||
Corresponding_transcript (3) | |||||||||
Other_sequence (19) | |||||||||
Associated_feature | WBsf643373 | ||||||||
WBsf643374 | |||||||||
WBsf978997 | |||||||||
WBsf217836 | |||||||||
WBsf217837 | |||||||||
WBsf217838 | |||||||||
WBsf217839 | |||||||||
WBsf217840 | |||||||||
Experimental_info | RNAi_result (14) | ||||||||
Expr_pattern | Expr9109 | ||||||||
Expr13237 | |||||||||
Expr15754 | |||||||||
Expr15906 | |||||||||
Expr1025163 | |||||||||
Expr1037269 | |||||||||
Expr1147209 | |||||||||
Expr2009132 | |||||||||
Expr2027369 | |||||||||
Drives_construct | WBCnstr00006161 | ||||||||
WBCnstr00013727 | |||||||||
WBCnstr00017529 | |||||||||
WBCnstr00017596 | |||||||||
WBCnstr00027688 | |||||||||
Construct_product | WBCnstr00027688 | ||||||||
Microarray_results (34) | |||||||||
Expression_cluster (410) | |||||||||
Interaction (112) | |||||||||
Map_info | Map | I | Position | 1.16367 | Error | 0.004812 | |||
Positive | Positive_clone | C55B7 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Mapping_data | Multi_point | 5183 | |||||||
4359 | |||||||||
5614 | |||||||||
Pseudo_map_position | |||||||||
Reference (38) | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |