WormBase Tree Display for Gene: WBGene00016903
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| WBGene00016903 | SMap | S_parent | Sequence | C53D5 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | |||||||
| Name | CGC_name | marc-4 | Person_evidence | WBPerson499 | |||||
| Sequence_name | C53D5.2 | ||||||||
| Molecular_name | C53D5.2 | ||||||||
| C53D5.2.1 | |||||||||
| CE52621 | |||||||||
| Other_name | CELE_C53D5.2 | Accession_evidence | NDB | BX284601 | |||||
| Public_name | marc-4 | ||||||||
| DB_info | Database | AceView | gene | 1A759 | |||||
| WormQTL | gene | WBGene00016903 | |||||||
| WormFlux | gene | WBGene00016903 | |||||||
| NDB | locus_tag | CELE_C53D5.2 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00016903|UniProtKB=Q9N5V7 | |||||||
| family | PTHR45981 | ||||||||
| NCBI | gene | 171616 | |||||||
| RefSeq | protein | NM_001361855.4 | |||||||
| TrEMBL | UniProtAcc | Q9N5V7 | |||||||
| UniProt_GCRP | UniProtAcc | Q9N5V7 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:30:58 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 09 Jan 2013 14:59:12 | WBPerson2970 | Name_change | CGC_name | marc-4 | ||||
| 3 | 21 Nov 2019 16:12:41 | WBPerson4025 | Event | Acquires_merge | WBGene00016904 | ||||
| Acquires_merge | WBGene00016904 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | marc | ||||||||
| Allele (88) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (14) | |||||||||
| Ortholog (42) | |||||||||
| Paralog | WBGene00007643 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| WormBase-Compara | |||||||||
| WBGene00013273 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00077696 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| WormBase-Compara | |||||||||
| WBGene00008433 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Automated_description | Predicted to enable MHC protein binding activity and ubiquitin protein ligase activity. Predicted to be involved in antigen processing and presentation of peptide antigen via MHC class II; immune response; and protein polyubiquitination. Predicted to be located in early endosome membrane; late endosome membrane; and lysosome. Is an ortholog of human MARCHF1 (membrane associated ring-CH-type finger 1). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C53D5.2 | |||||||
| Corresponding_CDS_history | C53D5.2:wp102 | ||||||||
| C53D5.2:wp263 | |||||||||
| C53D5.2:wp274 | |||||||||
| Corresponding_transcript | C53D5.2.1 | ||||||||
| Other_sequence | Dviv_isotig30635 | ||||||||
| Oden_isotig21417 | |||||||||
| Acan_isotig02864 | |||||||||
| Acan_isotig02863 | |||||||||
| CJC06734_1 | |||||||||
| Associated_feature | WBsf643007 | ||||||||
| WBsf217116 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00043093 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00094746 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00043094 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00003218 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00030115 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1012443 | ||||||||
| Expr1029131 | |||||||||
| Expr1037252 | |||||||||
| Expr1037253 | |||||||||
| Expr1147057 | |||||||||
| Expr1147058 | |||||||||
| Expr2001893 | |||||||||
| Expr2013385 | |||||||||
| Expr2020118 | |||||||||
| Expr2031617 | |||||||||
| Drives_construct | WBCnstr00027714 | ||||||||
| WBCnstr00027715 | |||||||||
| Construct_product | WBCnstr00027714 | ||||||||
| WBCnstr00027715 | |||||||||
| Microarray_results | SMD_C53D5.F | ||||||||
| SMD_C53D5.G | |||||||||
| 181779_at | |||||||||
| 181849_at | |||||||||
| A_12_P103287 | |||||||||
| A_12_P109084 | |||||||||
| Aff_C53D5_1638.F | |||||||||
| Aff_C53D5_1638.G | |||||||||
| GPL13394_WBGene00016903 | |||||||||
| GPL13394_WBGene00016904 | |||||||||
| GPL13914_C53D5.2 | |||||||||
| GPL13914_C53D5.3 | |||||||||
| GPL14144_C53D5.2_271-330_0.915_1_A | |||||||||
| GPL14144_C53D5.2_598-657_0.895_6_C | |||||||||
| GPL14144_C53D5.2_8-67_0.908_3_B | |||||||||
| GPL14144_C53D5.3_159-218_0.914_2_A | |||||||||
| GPL19516_CGZ0010409 | |||||||||
| GPL19516_CGZ0010410 | |||||||||
| GPL21109_C53D5.2 | |||||||||
| GPL21109_C53D5.3 | |||||||||
| GPL3518_CE20607 | |||||||||
| GPL3518_CE23610 | |||||||||
| GPL8304_CE_WBGene00016903_A | |||||||||
| GPL8304_CE_WBGene00016903_B | |||||||||
| GPL8304_CE_WBGene00016904_A | |||||||||
| GPL8673_C53D5_2P00025 | |||||||||
| GPL8673_C53D5_2P00179 | |||||||||
| GPL8673_C53D5_2P00360 | |||||||||
| GPL8673_C53D5_3P00068 | |||||||||
| GPL8673_C53D5_3P00093 | |||||||||
| GPL8673_C53D5_3P00119 | |||||||||
| GPL9450_C53D5.2 | |||||||||
| GPL9450_C53D5.3 | |||||||||
| cea2.i.01151 | |||||||||
| cea2.p.05416 | |||||||||
| Expression_cluster (186) | |||||||||
| Interaction | WBInteraction000547589 | ||||||||
| Map_info | Map | I | Position | -19.1103 | |||||
| Positive | Positive_clone | C53D5 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00027315 | ||||||||
| WBPaper00038491 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
