WormBase Tree Display for Gene: WBGene00016889
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| WBGene00016889 | SMap | S_parent | Sequence | C52E12 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | lst-6 | Paper_evidence | WBPaper00037702 | |||||
| Person_evidence | WBPerson220 | ||||||||
| WBPerson860 | |||||||||
| Sequence_name | C52E12.4 | ||||||||
| Molecular_name | C52E12.4 | ||||||||
| C52E12.4.1 | |||||||||
| CE31684 | |||||||||
| Other_name | CELE_C52E12.4 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | lst-6 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:30:58 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 15 Nov 2012 09:10:49 | WBPerson2970 | Name_change | CGC_name | lst-6 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | lst | ||||||||
| Allele (113) | |||||||||
| Strain | WBStrain00002588 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00062262 | ||||||||
| 00062263 | |||||||||
| 00062264 | |||||||||
| 00122396 | |||||||||
| 00122397 | |||||||||
| Contained_in_operon | CEOP2276 | ||||||||
| Ortholog (34) | |||||||||
| Paralog | WBGene00018681 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| WBGene00003058 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00004035 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Automated_description | Predicted to enable guanyl-nucleotide exchange factor activity and small GTPase binding activity. Predicted to be located in membrane. Human ortholog(s) of this gene implicated in developmental and epileptic encephalopathy 49. Is an ortholog of human DENND5A (DENN domain containing 5A) and DENND5B (DENN domain containing 5B). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0080441 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:19344) | ||||
| Molecular_info | Corresponding_CDS | C52E12.4 | |||||||
| Corresponding_transcript | C52E12.4.1 | ||||||||
| Other_sequence (18) | |||||||||
| Associated_feature | WBsf650201 | ||||||||
| WBsf650202 | |||||||||
| WBsf665668 | |||||||||
| WBsf665669 | |||||||||
| WBsf988329 | |||||||||
| WBsf1012476 | |||||||||
| WBsf223278 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00043034 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00012313 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00043035 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00076234 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00012314 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Chronogram1854 | ||||||||
| Expr5574 | |||||||||
| Expr1014424 | |||||||||
| Expr1037248 | |||||||||
| Expr1146996 | |||||||||
| Expr2013300 | |||||||||
| Expr2031531 | |||||||||
| Drives_construct | WBCnstr00003147 | ||||||||
| WBCnstr00027724 | |||||||||
| Construct_product | WBCnstr00027724 | ||||||||
| Microarray_results (23) | |||||||||
| Expression_cluster (105) | |||||||||
| Interaction (20) | |||||||||
| Map_info | Map | II | Position | 0.289206 | |||||
| Positive | Positive_clone | C52E12 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
