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WormBase Tree Display for Gene: WBGene00016607

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Name Class

WBGene00016607SMapS_parentSequenceC43E11
IdentityVersion1
NameSequence_nameC43E11.9
Molecular_nameC43E11.9
C43E11.9.1
CE08687
Other_nameCELE_C43E11.9Accession_evidenceNDBBX284601
Public_nameC43E11.9
DB_infoDatabaseAceViewgene1E836
WormQTLgeneWBGene00016607
WormFluxgeneWBGene00016607
NDBlocus_tagCELE_C43E11.9
PanthergeneCAEEL|WormBase=WBGene00016607|UniProtKB=P91154
familyPTHR23415
NCBIgene172028
RefSeqproteinNM_058941.6
TREEFAMTREEFAM_IDTF300081
TrEMBLUniProtAccP91154
UniProt_GCRPUniProtAccP91154
SpeciesCaenorhabditis elegans
HistoryVersion_change128 May 2004 13:30:57WBPerson1971EventImportedInitial conversion from CDS class of stlace from WS125
StatusLive
Gene_infoBiotypeSO:0001217
AlleleWBVar01499919
WBVar02151302
WBVar00631367
WBVar00631368
WBVar00631369
WBVar01499786
WBVar01499985
WBVar00332173
WBVar01498959
RNASeq_FPKM (74)
GO_annotation00050156
00050157
00050158
00050159
00050160
00050161
00050162
00122188
00122189
00122190
Contained_in_operonCEOP1172
Ortholog (35)
ParalogWBGene00001051Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00022162Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to enable RNA binding activity. Predicted to be involved in ribosomal large subunit biogenesis. Predicted to be located in nucleolus. Predicted to be part of preribosome, large subunit precursor. Is an ortholog of human NIP7 (nucleolar pre-rRNA processing protein NIP7).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSC43E11.9
Corresponding_transcriptC43E11.9.1
Other_sequence (53)
Associated_featureWBsf219259
Experimental_infoRNAi_result (11)
Expr_patternExpr1024449
Expr1037131
Expr1146377
Expr2001599
Expr2019823
Drives_constructWBCnstr00027942
Construct_productWBCnstr00027942
Microarray_results (17)
Expression_clusterWBPaper00028451:Abundant_spermatogenesis_enriched
WBPaper00031040:TGF-beta_adult_downregulated
WBPaper00032425:up_in_zfp-1
WBPaper00032528:L3_enriched
WBPaper00037950:bodywall-muscle_larva_enriched
WBPaper00037950:CEP-sheath-cells_Day1-adult_expressed
WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
WBPaper00037950:hypodermis_L3-L4-larva_expressed
WBPaper00044656:tatn-1(qd182)_downregulated
WBPaper00044736:flat_dev_expression
WBPaper00044760:germline_specific
WBPaper00045521:Gender_Neutral
WBPaper00045729:gld-4(RNAi)_downregulated
WBPaper00045774:clk-1_downregulated
WBPaper00047132:skn-1(RNAi)_downregulated_glp-1(ts)-dependent
WBPaper00048923:Aging_regulated
WBPaper00048971:daf-16(mgDf50)_upregulated_L1
WBPaper00048988:neuron_expressed
WBPaper00049545:cco-1(RNAi)_downregulated
WBPaper00049545:jmjd-3.1(+)_downregulated
WBPaper00049545:sur-5p-jmjd-1.2(+)_downregulated
WBPaper00049942:hsf-1(RNAi)_downregulated
WBPaper00050344:AFD-neuron_enriched
WBPaper00050726:OsmoticStress_regulated_Food
WBPaper00050743:elli-1(sam-3)_upregulated
WBPaper00050801:DAF-16_dauer_regulome
WBPaper00050801:DPY-21_dauer_regulome
WBPaper00050990:intestine_expressed
WBPaper00050990:seam_expressed
WBPaper00051039:germline_enriched
WBPaper00051245:body-wall-muscle_nucleus_expressed
WBPaper00051245:epidermis_cytoplasm_expressed
WBPaper00051245:intestine_cytoplasm_expressed
WBPaper00051245:intestine_nucleus_expressed
WBPaper00051245:nucleus_specific
WBPaper00052884:emb-4(hc60)_downregulated
WBPaper00053321:nos-1(gv5)nos-2(RNAi)_downregulated_fed-L1_Truseq
WBPaper00053388:dauer_regulated_Cluster1
WBPaper00053599:oocyte_vs_mitosis_upregulated
WBPaper00053810:daf-2(e1370)_downregulated
WBPaper00053810:isp-1(qm150)_downregulated
WBPaper00053810:nuo-6(qm200)_downregulated
WBPaper00055354:Rapamycin-Psora-Allantoin_downregulated
WBPaper00055354:Rapamycin-Rifampicin-Psora_downregulated
WBPaper00055354:Rapamycin-Rifampicin_downregulated
WBPaper00055354:Rifampicin-Psora_downregulated
WBPaper00055482:pmt-2(RNAi)_downregulated
WBPaper00055626:pry-1(mu38)_downregulated
WBPaper00055648:germline_expressed
WBPaper00055971:nhl-2(ok818)_20C_downregulated
WBPaper00055971:nhl-2(ok818)_25C_downregulated
WBPaper00056090:E.faecalis_downregulated_hpx-2(dg047)
WBPaper00056471:aak-1(tm1944);aak-2(ok524)_downregulated
WBPaper00056471:S.aureus-4h_downregulated_N2
WBPaper00056826:SGP_biased
WBPaper00057041:unc-70(cas983)_upregulated
WBPaper00057288:Cold_downregulated_protein
WBPaper00057288:iff-1(RNAi)_downregulated_transcript
WBPaper00057288:iff-1(RNAi)_upregulated_protein
WBPaper00058598:sin-3(tm1276)_downregulated
WBPaper00059328:mrps-5(RNAi)_downregulated_mRNA
WBPaper00059328:mrps-5(RNAi)_downregulated_protein
WBPaper00059605:MUT-16_interacting
WBPaper00060014:set-2(tm1630)_upregulated
WBPaper00060084:cco-1(RNAi)_downregulated_N2
WBPaper00060100:SiNP_downregulated_mRNA
WBPaper00060811:L1_vs_adult_downregulated_neural
WBPaper00061203:sin-3(tm1276)_upregulated
WBPaper00061340:M_cell
WBPaper00061340:Neuroblast_I6_M5
WBPaper00061340:pm7
WBPaper00061341:28C_24h_downregulated
WBPaper00061341:28C_48h_downregulated
WBPaper00061479:prg-1(tm872)_upregulated
WBPaper00061527:trm-1-H43I07.2
WBPaper00061902:camt-1(ok515)_regulated_RMG
WBPaper00062325:muscle_depleted_coding-RNA
WBPaper00062498:PPM-1.D_interacting
WBPaper00062554:MAGU-2_interacting
WBPaper00062669:extracellular-vesicle_protein
WBPaper00064071:NHR-49_interacting
WBPaper00064080:miR-58_miRNA_interacting
WBPaper00064088:Day-1-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
WBPaper00064088:Day-1-adult_vs_L4_downregulated_glp-1(e2141)
WBPaper00064088:Day-3-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
WBPaper00064088:Day-3-adult_vs_L4_downregulated_glp-1(e2141)
WBPaper00064403:Heat-killed-E.Coli_upregulated
WBPaper00064716:paraquat_upregulated
WBPaper00065158:25C_vs_15C_downregulated_WholeAnimal
WBPaper00065993:glp-1(e2141)_downregulated
WBPaper00066146:germline-inx-14(RNAi)_downregulated_PA14
cgc4386_cluster_5_5
cgc4489_group_3
WBPaper00024393:strongly_regulated_dauer_genes
WBPaper00025032:cluster_2
WBPaper00025141:N2_Expressed_Genes
WBPaper00025141:unc-4::GFP_Expressed_Genes
WBPaper00026929:sir-2.1_overexpression_regulated
WBPaper00026980:intestine_enriched
WBPaper00027342:alpha-Synuclein(WT)_upregulated
WBPaper00032165:A_to_C_transit_decreased
WBPaper00032948:FedUp
WBPaper00034739:N2moreDR1350
WBPaper00035227:heat_shock_regulated
WBPaper00035905:FBF-1_Associated
WBPaper00036123:Atrazine_regulated
WBPaper00036286:Pattern_G
WBPaper00037695:WC_5-day
WBPaper00038231:Cry5B_1.5-fold_downregulated
WBPaper00038231:Cry5B_2-fold_downregulated
WBPaper00040184:hcf-1down_sir-2.1down_daf-2down
WBPaper00040210:Chlorpyrifos_24C_regulated
WBPaper00040858:eQTL_age_regulated_developing
WBPaper00041606:CE_S.marcescens_regulated
WBPaper00041606:CE_X.nematophila_regulated
WBPaper00041939:control_vs_EtBr-exposed_48h
WBPaper00041939:control_vs_UVC-EtBr-exposed_48h
WBPaper00041939:control_vs_UVC-exposed_3h
WBPaper00041939:EtBr-exposed_vs_UVC-exposed_3h
WBPaper00041939:EtBr-exposed_vs_UVC-exposed_48h
WBPaper00041939:UVC-EtBr-exposed_vs_EtBr-exposed_3h
WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_48h
WBPaper00045263:nuo-6(qm200)_downregulated
WBPaper00047070:DAF-16-dependent_UV_response
WBPaper00047070:N2_starvation_downregulated
WBPaper00048989:N2_rapamycin_upregulated
WBPaper00053236:daf-16(mgDF50)_regulated_Starved
WBPaper00053236:Starvation_regulated_GR1307
WBPaper00053236:Starvation_regulated_N2
[cgc5767]:cluster_2
[cgc5767]:expression_class_E
[cgc5767]:expression_class_E_pi(83_min)
[cgc5767]:expression_class_M
[cgc5767]:expression_class_ME
[cgc6390]:oogenesis-enriched
Interaction (257)
Map_infoPositivePositive_cloneC43E11Inferred_automaticallyFrom sequence, transcript, pseudogene data
Interpolated_map_positionI-1.52019
ReferenceWBPaper00034662
WBPaper00038491
WBPaper00055090
WBPaper00061547
WBPaper00064339
MethodGene