WormBase Tree Display for Gene: WBGene00016354
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| WBGene00016354 | SMap | S_parent | Sequence | C33F10 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | |||||||
| Name | CGC_name | rig-6 | Person_evidence | WBPerson1103 | |||||
| Sequence_name | C33F10.5 | ||||||||
| Molecular_name | C33F10.5c | ||||||||
| C33F10.5a | |||||||||
| CE31679 | |||||||||
| C33F10.5d | |||||||||
| CE37327 | |||||||||
| C33F10.5c.1 | |||||||||
| C33F10.5d.1 | |||||||||
| Other_name | tag-227 | Person_evidence | WBPerson201 | ||||||
| CELE_C33F10.5 | Accession_evidence | NDB | BX284602 | ||||||
| Public_name | rig-6 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:30:57 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 25 Jan 2005 16:28:46 | WBPerson2970 | Name_change | CGC_name | rig-6 | ||||
| 3 | 06 Oct 2005 11:33:04 | WBPerson2970 | Event | Acquires_merge | WBGene00044064 | ||||
| Name_change | Other_name | tag-227 | |||||||
| Acquires_merge | WBGene00044064 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | rig | ||||||||
| Allele (166) | |||||||||
| Possibly_affected_by | WBVar02157851 | ||||||||
| Strain | WBStrain00036006 | ||||||||
| WBStrain00036110 | |||||||||
| WBStrain00036147 | |||||||||
| WBStrain00036345 | |||||||||
| WBStrain00055147 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (36) | |||||||||
| Ortholog (51) | |||||||||
| Paralog (19) | |||||||||
| Structured_description | Concise_description | rig-6 encodes a protein with immunoglobulin and fibronectin type III domains and is similar to vertebrate contactins; based upon large-scale RNAi screens, rig-6 activity appears to be required for reproduction and positive regulation of body size; rig-6::gfp reporter fusion are expressed in neurons, particularly the URX ring interneurons. | Paper_evidence | WBPaper00004651 | |||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 19 Jul 2007 00:00:00 | ||||||||
| Automated_description | Predicted to enable cell-cell adhesion mediator activity. Involved in several processes, including axon guidance; negative regulation of defecation rhythm; and regulation of locomotion. Located in axon; neuronal cell body; and synapse. Expressed in several structures, including body wall musculature; neurons; non-striated muscle; rectal epithelium; and spermatheca. Human ortholog(s) of this gene implicated in several diseases, including Compton-North congenital myopathy; familial adult myoclonic epilepsy 5; and high grade glioma. Is an ortholog of human CNTN6 (contactin 6). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0111691 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:2172) | ||||
| DOID:850 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:2172) | ||||||
| DOID:3070 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:2172) | ||||||
| DOID:0080101 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:2171) | ||||||
| Molecular_info | Corresponding_CDS | C33F10.5c | |||||||
| C33F10.5d | |||||||||
| Corresponding_CDS_history | C33F10.5a:wp261 | ||||||||
| C33F10.5b:wp261 | |||||||||
| Corresponding_transcript | C33F10.5a | ||||||||
| C33F10.5c.1 | |||||||||
| C33F10.5d.1 | |||||||||
| Other_sequence (26) | |||||||||
| Associated_feature (29) | |||||||||
| Experimental_info | RNAi_result (11) | ||||||||
| Expr_pattern | Expr1767 | ||||||||
| Expr8850 | |||||||||
| Expr10584 | |||||||||
| Expr16093 | |||||||||
| Expr1025818 | |||||||||
| Expr1037002 | |||||||||
| Expr1145797 | |||||||||
| Expr2015355 | |||||||||
| Expr2033589 | |||||||||
| Drives_construct | WBCnstr00001454 | ||||||||
| WBCnstr00013560 | |||||||||
| WBCnstr00017011 | |||||||||
| WBCnstr00028138 | |||||||||
| Construct_product | WBCnstr00017011 | ||||||||
| WBCnstr00028138 | |||||||||
| Microarray_results (38) | |||||||||
| Expression_cluster (196) | |||||||||
| Interaction (12) | |||||||||
| Map_info | Map | II | Position | -3.02721 | Error | 0.005159 | |||
| Positive | Positive_clone | C33F10 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 5556 | |||||||
| 5328 | |||||||||
| Pseudo_map_position | |||||||||
| Reference (13) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
