WormBase Tree Display for Gene: WBGene00016354

WBGene00016354 SMap: S_parent: Sequence: C33F10
  Identity: Version: 3
    Name: CGC_name: rig-6 Person_evidence: WBPerson1103
      Sequence_name: C33F10.5
      Molecular_name: C33F10.5c
        C33F10.5a
        CE31679
        C33F10.5d
        CE37327
        C33F10.5c.1
        C33F10.5d.1
      Other_name: tag-227 Person_evidence: WBPerson201
        CELE_C33F10.5 Accession_evidence: NDB BX284602
      Public_name: rig-6
    DB_info: Database (11)
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:30:57 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 25 Jan 2005 16:28:46 WBPerson2970 Name_change: CGC_name: rig-6
        3 06 Oct 2005 11:33:04 WBPerson2970 Event: Acquires_merge: WBGene00044064
              Name_change: Other_name: tag-227
      Acquires_merge: WBGene00044064
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: rig
    Allele: WBVar02157851
      WBVar00728175
      WBVar00728176
      WBVar00728177
      WBVar01499702
      WBVar00728178
      WBVar00728179
      WBVar00728180
      WBVar00728181
      WBVar00728182
      WBVar00728183
      WBVar00728184
      WBVar00728185
      WBVar00728186
      WBVar00728187
      WBVar00728188
      WBVar01982432
      WBVar00728189
      WBVar00728190
      WBVar00728191
      WBVar00728192
      WBVar00728193
      WBVar00728194
      WBVar00728195
      WBVar00728196
      WBVar00728197
      WBVar00728198
      WBVar00728199
      WBVar01498435
      WBVar00728200
      WBVar00728201
      WBVar00728202
      WBVar00728203
      WBVar00145854
      WBVar00728204
      WBVar01413425
      WBVar00728205
      WBVar00171760
      WBVar00275968
      WBVar00728206
      WBVar00171761
      WBVar00728207
      WBVar00728208
      WBVar00171762
      WBVar00728209
      WBVar00171763
      WBVar00728210
      WBVar00171764
      WBVar00728211
      WBVar00171765
      WBVar00728212
      WBVar02129849
      WBVar00171766
      WBVar02129850
      WBVar02129851
      WBVar00364852
      WBVar00364853
      WBVar00364854
      WBVar00364855
      WBVar00364856
      WBVar00364857
      WBVar00364858
      WBVar00364859
      WBVar00364860
      WBVar00364861
      WBVar00364862
      WBVar00364863
      WBVar00364864
      WBVar00364865
      WBVar00364866
      WBVar00364867
      WBVar00364868
      WBVar00364869
      WBVar00364870
      WBVar00364871
      WBVar01783211
      WBVar01783212
      WBVar00364872
      WBVar00364873
      WBVar01783213
      WBVar00364874
      WBVar01783214
      WBVar01783215
      WBVar01783216
      WBVar01783217
      WBVar02017887
      WBVar01559459
      WBVar01404998
      WBVar02029209
      WBVar01405000
      WBVar01792116
      WBVar01719626
      WBVar01719627
      WBVar01719628
      WBVar01372233
      WBVar01372244
      WBVar01372255
      WBVar00253509
      WBVar00237924
      WBVar00237925
      WBVar01239520
      WBVar01239525
      WBVar01490993
      WBVar01891695
      WBVar01695503
      WBVar01949044
      WBVar02144753
      WBVar00145782
      WBVar00728132
      WBVar02033188
      WBVar00728133
      WBVar00728134
      WBVar00728135
      WBVar00728136
      WBVar00728137
      WBVar00728138
      WBVar00728139
      WBVar00728140
      WBVar00728141
      WBVar00728142
      WBVar00728143
      WBVar00728144
      WBVar00223018
      WBVar00728145
      WBVar00223019
      WBVar00223023
      WBVar00728146
      WBVar00728147
      WBVar00223024
      WBVar00223027
      WBVar00728148
      WBVar00223028
      WBVar00728149
      WBVar00223030
      WBVar00728150
      WBVar00728151
      WBVar00728152
      WBVar00728153
      WBVar00728154
      WBVar00728155
      WBVar00092798
      WBVar00728156
      WBVar00728157
      WBVar00728158
      WBVar00728159
      WBVar00728160
      WBVar00728161
      WBVar00728162
      WBVar00728163
      WBVar00728164
      WBVar00728165
      WBVar01437616
      WBVar00728166
      WBVar00728167
      WBVar00092444
      WBVar00103658
      WBVar01437617
      WBVar00728168
      WBVar00103659
      WBVar00728169
      WBVar00728170
      WBVar00728171
      WBVar00728172
      WBVar00728173
      WBVar01477433
      WBVar00728174
    Possibly_affected_by: WBVar02157851
    Strain: WBStrain00036006
      WBStrain00036110
      WBStrain00036147
      WBStrain00036345
      WBStrain00055147
    RNASeq_FPKM (74)
    GO_annotation (36)
    Ortholog (51)
    Paralog (19)
    Structured_description: Concise_description: rig-6 encodes a protein with immunoglobulin and fibronectin type III domains and is similar to vertebrate contactins; based upon large-scale RNAi screens, rig-6 activity appears to be required for reproduction and positive regulation of body size; rig-6::gfp reporter fusion are expressed in neurons, particularly the URX ring interneurons. Paper_evidence: WBPaper00004651
          Curator_confirmed: WBPerson1843
          Date_last_updated: 19 Jul 2007 00:00:00
      Automated_description: Predicted to enable cell-cell adhesion mediator activity. Involved in several processes, including axon guidance; negative regulation of defecation rhythm; and regulation of locomotion. Located in axon; neuronal cell body; and synapse. Expressed in several structures, including body wall musculature; neurons; non-striated muscle; rectal epithelium; and spermatheca. Human ortholog(s) of this gene implicated in several diseases, including Compton-North congenital myopathy; familial adult myoclonic epilepsy 5; and high grade glioma. Is an ortholog of human CNTN6 (contactin 6). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Disease_info: Potential_model: DOID:0111691 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:2172)
      DOID:850 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:2172)
      DOID:3070 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:2172)
      DOID:0080101 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:2171)
  Molecular_info: Corresponding_CDS: C33F10.5c
      C33F10.5d
    Corresponding_CDS_history: C33F10.5a:wp261
      C33F10.5b:wp261
    Corresponding_transcript: C33F10.5a
      C33F10.5c.1
      C33F10.5d.1
    Other_sequence (26)
    Associated_feature (29)
  Experimental_info: RNAi_result (11)
    Expr_pattern: Expr1767
      Expr8850
      Expr10584
      Expr16093
      Expr1025818
      Expr1037002
      Expr1145797
      Expr2015355
      Expr2033589
    Drives_construct: WBCnstr00001454
      WBCnstr00013560
      WBCnstr00017011
      WBCnstr00028138
    Construct_product: WBCnstr00017011
      WBCnstr00028138
    Microarray_results (38)
    Expression_cluster (196)
    Interaction (12)
  Map_info: Map: II Position: -3.02721 Error: 0.005159
    Positive: Positive_clone: C33F10 Inferred_automatically: From sequence, transcript, pseudogene data
    Mapping_data: Multi_point: 5556
        5328
    Pseudo_map_position
  Reference (13)
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene