WormBase Tree Display for Gene: WBGene00016313
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| WBGene00016313 | SMap | S_parent | Sequence | C32D5 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | set-4 | Person_evidence | WBPerson1730 | |||||
| WBPerson268 | |||||||||
| WBPerson632 | |||||||||
| Sequence_name | C32D5.5 | ||||||||
| Molecular_name | C32D5.5 | ||||||||
| C32D5.5.1 | |||||||||
| CE01845 | |||||||||
| Other_name | tag-337 | Person_evidence | WBPerson201 | ||||||
| CELE_C32D5.5 | Accession_evidence | NDB | BX284602 | ||||||
| Public_name | set-4 | ||||||||
| DB_info | Database (13) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:30:57 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 03 May 2007 10:33:07 | WBPerson2970 | Name_change | CGC_name | set-4 | ||||
| Other_name | tag-337 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | set | ||||||||
| Allele (24) | |||||||||
| Strain | WBStrain00027495 | ||||||||
| WBStrain00036235 | |||||||||
| WBStrain00050682 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (16) | |||||||||
| Ortholog (38) | |||||||||
| Structured_description | Concise_description | set-4 encodes a putative histone H4 lysine-20 methyltransferase; SET-4 is orthologous to Drosophila SUV4-20, and to human SUV420H1 (OMIM:610881) and SUV420H2; set-4(RNAi) animals exhibit an extended adult fertile worm lifespan. | Paper_evidence | WBPaper00005599 | |||||
| WBPaper00030864 | |||||||||
| WBPaper00031080 | |||||||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 11 Oct 2007 00:00:00 | ||||||||
| Automated_description | Predicted to enable histone H4K20me methyltransferase activity. Involved in determination of adult lifespan. Predicted to be located in chromosome and nucleus. Expressed in several structures, including hypodermis and muscle cell. Human ortholog(s) of this gene implicated in autosomal dominant intellectual developmental disorder 51. Is an ortholog of human KMT5B (lysine methyltransferase 5B) and KMT5C (lysine methyltransferase 5C). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0080232 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:24283) | ||||
| Molecular_info | Corresponding_CDS | C32D5.5 | |||||||
| Corresponding_transcript | C32D5.5.1 | ||||||||
| Other_sequence (14) | |||||||||
| Associated_feature | WBsf650129 | ||||||||
| WBsf650130 | |||||||||
| WBsf665596 | |||||||||
| WBsf988134 | |||||||||
| WBsf1012362 | |||||||||
| WBsf223155 | |||||||||
| WBsf223156 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00041670 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00011480 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00029415 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00091986 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00113446 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00091992 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00007949 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00091991 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00091514 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00091988 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr13301 | ||||||||
| Expr14355 | |||||||||
| Expr1010500 | |||||||||
| Expr1036978 | |||||||||
| Expr1145695 | |||||||||
| Expr2015780 | |||||||||
| Expr2034013 | |||||||||
| Drives_construct | WBCnstr00028168 | ||||||||
| WBCnstr00039182 | |||||||||
| Construct_product | WBCnstr00028168 | ||||||||
| Regulate_expr_cluster | WBPaper00050801:SET-4_dauer_regulome | ||||||||
| Antibody | WBAntibody00002748 | ||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (112) | |||||||||
| Interaction (35) | |||||||||
| Map_info | Map | II | Position | -0.381269 | Error | 0.000183 | |||
| Positive | Positive_clone | C32D5 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 5272 | |||||||
| Pseudo_map_position | |||||||||
| Reference (16) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
