WormBase Tree Display for Gene: WBGene00016289
expand all nodes | collapse all nodes | view schema
| WBGene00016289 | SMap | S_parent | Sequence | C31H1 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | lntl-1 | Person_evidence | WBPerson190 | |||||
| WBPerson268 | |||||||||
| Sequence_name | C31H1.6 | ||||||||
| Molecular_name | C31H1.6a | ||||||||
| C31H1.6a.1 | |||||||||
| CE31326 | |||||||||
| C31H1.6b | |||||||||
| CE32600 | |||||||||
| C31H1.6c | |||||||||
| CE49172 | |||||||||
| C31H1.6b.1 | |||||||||
| C31H1.6c.1 | |||||||||
| C31H1.6d | |||||||||
| Other_name | CELE_C31H1.6 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | lntl-1 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:30:57 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 05 Feb 2007 15:10:43 | WBPerson2970 | Name_change | CGC_name | lntl-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | lntl | ||||||||
| Allele (75) | |||||||||
| Strain | WBStrain00032238 | ||||||||
| WBStrain00037041 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00021786 | ||||||||
| 00021787 | |||||||||
| Ortholog (32) | |||||||||
| Paralog | WBGene00003010 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | lntl-1 encodes a novel protein, conserved amongst nematodes; in C. elegans, LNTL-1 is most closely related to LIN-24, a protein containing a domain found in bacterial toxins such as the Bacillus sphaericus Mtx3 mosquitocidal toxin; animals containing a loss-of-function lntl-1 mutation, as well as animals doubly mutant for lntl-1 and lin-24, appear wild type. | Paper_evidence | WBPaper00031858 | |||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 12 Jun 2008 00:00:00 | ||||||||
| Automated_description | Enriched in several structures, including anterior ganglion; arcade cell; excretory system; muscle cell; and neurons based on microarray; tiling array; RNA-seq; and single-cell RNA-seq studies. Is affected by several genes including daf-2; dpy-10; and rrf-3 based on microarray; RNA-seq; and proteomic studies. Is affected by twelve chemicals including stavudine; Zidovudine; and Psoralens based on RNA-seq and microarray studies. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C31H1.6a | |||||||
| C31H1.6b | |||||||||
| C31H1.6c | |||||||||
| Corresponding_transcript | C31H1.6d | ||||||||
| C31H1.6a.1 | |||||||||
| C31H1.6b.1 | |||||||||
| C31H1.6c.1 | |||||||||
| Other_sequence (30) | |||||||||
| Associated_feature (11) | |||||||||
| Experimental_info | RNAi_result | WBRNAi00011450 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00029391 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00041626 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1025089 | ||||||||
| Expr1036966 | |||||||||
| Expr1145649 | |||||||||
| Expr2013242 | |||||||||
| Expr2031473 | |||||||||
| Drives_construct | WBCnstr00028187 | ||||||||
| Construct_product | WBCnstr00028187 | ||||||||
| Microarray_results (25) | |||||||||
| Expression_cluster (249) | |||||||||
| Interaction (16) | |||||||||
| Map_info | Map | IV | Position | 2.40752 | Error | 0.003203 | |||
| Positive | Positive_clone | C31H1 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00031858 | ||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
