WormBase Tree Display for Gene: WBGene00016185
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WBGene00016185 | SMap | S_parent | Sequence | C28F5 | ||||||
---|---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | ||||||||
Name | Sequence_name | C28F5.4 | ||||||||
Molecular_name | C28F5.4 | |||||||||
Other_name | CELE_C28F5.4 | Accession_evidence | NDB | BX284602 | ||||||
Public_name | C28F5.4 | |||||||||
DB_info | Database | AceView | gene | 2H808 | ||||||
WormQTL | gene | WBGene00016185 | ||||||||
SignaLink | protein | WBGene00016185 | ||||||||
WormFlux | gene | WBGene00016185 | ||||||||
NDB | locus_tag | CELE_C28F5.4 | ||||||||
NCBI | gene | 182987 | ||||||||
Species | Caenorhabditis elegans | |||||||||
History | Version_change | 1 | 28 May 2004 13:30:57 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | |||
2 | 21 Oct 2019 15:27:04 | WBPerson4025 | Event | Changed_class | CDS | Pseudogene | ||||
Status | Live | |||||||||
Gene_info | Biotype | SO:0000336 | ||||||||
Allele (59) | ||||||||||
RNASeq_FPKM (74) | ||||||||||
Ortholog | WBGene00030925 | Caenorhabditis briggsae | From_analysis | OrthoMCL | ||||||
WBGene00155264 | Caenorhabditis brenneri | From_analysis | TreeFam | |||||||
WBGene00127059 | Caenorhabditis japonica | From_analysis | TreeFam | |||||||
WBGene00058877 | Caenorhabditis remanei | From_analysis | TreeFam | |||||||
SGD:S000004381 | Saccharomyces cerevisiae | From_analysis | EnsEMBL-Compara | |||||||
Hieranoid | ||||||||||
Inparanoid | ||||||||||
OMA | ||||||||||
OrthoFinder | ||||||||||
OrthoInspector | ||||||||||
Panther | ||||||||||
PhylomeDB | ||||||||||
SonicParanoid | ||||||||||
FB:FBgn0001247 | Drosophila melanogaster | From_analysis | EnsEMBL-Compara | |||||||
Hieranoid | ||||||||||
Inparanoid | ||||||||||
OMA | ||||||||||
OrthoFinder | ||||||||||
Panther | ||||||||||
PhylomeDB | ||||||||||
SonicParanoid | ||||||||||
ZFIN:ZDB-GENE-070410-85 | Danio rerio | From_analysis | EnsEMBL-Compara | |||||||
Hieranoid | ||||||||||
Inparanoid | ||||||||||
OMA | ||||||||||
OrthoFinder | ||||||||||
Panther | ||||||||||
PhylomeDB | ||||||||||
SonicParanoid | ||||||||||
HGNC:5381 | Homo sapiens | From_analysis | EnsEMBL-Compara | |||||||
Hieranoid | ||||||||||
Inparanoid | ||||||||||
OMA | ||||||||||
OrthoFinder | ||||||||||
Panther | ||||||||||
PhylomeDB | ||||||||||
SonicParanoid | ||||||||||
MGI:96412 | Mus musculus | From_analysis | EnsEMBL-Compara | |||||||
Hieranoid | ||||||||||
Inparanoid | ||||||||||
OMA | ||||||||||
OrthoFinder | ||||||||||
Panther | ||||||||||
PhylomeDB | ||||||||||
SonicParanoid | ||||||||||
RGD:2861 | Rattus norvegicus | From_analysis | EnsEMBL-Compara | |||||||
Hieranoid | ||||||||||
Inparanoid | ||||||||||
OMA | ||||||||||
OrthoFinder | ||||||||||
Panther | ||||||||||
PhylomeDB | ||||||||||
SonicParanoid | ||||||||||
Paralog | WBGene00013492 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Inparanoid_8 | ||||||||||
Panther | ||||||||||
WBGene00015359 | Caenorhabditis elegans | From_analysis | TreeFam | |||||||
Inparanoid_8 | ||||||||||
Panther | ||||||||||
WBGene00015360 | Caenorhabditis elegans | From_analysis | TreeFam | |||||||
Inparanoid_8 | ||||||||||
Panther | ||||||||||
WBGene00018426 | Caenorhabditis elegans | From_analysis | TreeFam | |||||||
Inparanoid_8 | ||||||||||
Panther | ||||||||||
Structured_description | Automated_description | Enriched in male based on RNA-seq studies. Is affected by several genes including eat-2; sir-2.1; and npr-1 based on tiling array; microarray; and RNA-seq studies. Is affected by four chemicals including antimycin; Doxycycline; and paraquat based on RNA-seq and microarray studies. Human ortholog(s) of this gene implicated in Alzheimer's disease; diabetic encephalopathy; and type 2 diabetes mellitus. Human IDE enables several functions, including insulin binding activity; ion binding activity; and protein homodimerization activity. Is an ortholog of human IDE (insulin degrading enzyme). | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | |||||||||
WBPerson37462 | ||||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | |||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | |||||||||
Disease_info | Potential_model | DOID:10652 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:5381) | |||||
DOID:0050850 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:5381) | |||||||
DOID:9352 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:5381) | |||||||
Molecular_info | Corresponding_CDS_history | C28F5.4:wp156 | ||||||||
C28F5.4:wp274 | ||||||||||
Corresponding_pseudogene | C28F5.4 | |||||||||
Other_sequence | BMC02508_1 | |||||||||
Experimental_info | Expr_pattern | Expr1019568 | ||||||||
Expr1145448 | ||||||||||
Drives_construct | WBCnstr00028262 | |||||||||
Construct_product | WBCnstr00028262 | |||||||||
Microarray_results (18) | ||||||||||
Expression_cluster (53) | ||||||||||
Interaction (28) | ||||||||||
Map_info | Positive | Positive_clone | C28F5 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Interpolated_map_position | II | 0.503578 | ||||||||
Reference | WBPaper00038491 | |||||||||
WBPaper00049886 | ||||||||||
WBPaper00055090 | ||||||||||
WBPaper00063976 | ||||||||||
Method | Gene |