WormBase Tree Display for Gene: WBGene00016180
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| WBGene00016180 | SMap | S_parent | Sequence | C28C12 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | srlf-3 | Person_evidence | WBPerson260 | |||||
| Laboratory_evidence | OH | ||||||||
| Sequence_name | C28C12.4 | ||||||||
| Molecular_name | C28C12.4 | ||||||||
| C28C12.4.1 | |||||||||
| CE04111 | |||||||||
| Other_name | C28C12.4 | ||||||||
| CELE_C28C12.4 | Accession_evidence | NDB | BX284604 | ||||||
| Public_name | srlf-3 | ||||||||
| DB_info | Database | AceView | gene | 4J251 | |||||
| WormQTL | gene | WBGene00016180 | |||||||
| WormFlux | gene | WBGene00016180 | |||||||
| NDB | locus_tag | CELE_C28C12.4 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00016180|UniProtKB=Q18280 | |||||||
| family | PTHR21593 | ||||||||
| NCBI | gene | 182978 | |||||||
| RefSeq | protein | NM_069047.4 | |||||||
| TREEFAM | TREEFAM_ID | TF316074 | |||||||
| TrEMBL | UniProtAcc | Q18280 | |||||||
| UniProt_GCRP | UniProtAcc | Q18280 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:30:57 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 03 Oct 2022 15:59:20 | WBPerson21950 | Name_change | CGC_name | srlf-3 | ||||
| Other_name | C28C12.4 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | srlf | ||||||||
| Allele | WBVar01500079 | ||||||||
| WBVar01498996 | |||||||||
| WBVar01499396 | |||||||||
| WBVar00926983 | |||||||||
| WBVar00926984 | |||||||||
| WBVar00926985 | |||||||||
| WBVar01794927 | |||||||||
| WBVar01499633 | |||||||||
| WBVar02153765 | |||||||||
| WBVar01500245 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog (35) | |||||||||
| Paralog (39) | |||||||||
| Structured_description | Automated_description | Expressed in pharyngeal muscle cell and tail neurons. Is predicted to encode a protein with the following domains: SXP/RAL-2 family protein Ani s 5-like, metal-binding domain and SXP/RAL-2 family protein Ani s 5-like, cation-binding domain. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C28C12.4 | |||||||
| Corresponding_transcript | C28C12.4.1 | ||||||||
| Other_sequence | Tcir_isotig21087 | ||||||||
| CJC00220_1 | |||||||||
| CJC03236_1 | |||||||||
| CSC00781_1 | |||||||||
| FD517761.1 | |||||||||
| Associated_feature | WBsf646167 | ||||||||
| WBsf228687 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00029295 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00041401 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00011293 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr3883 | ||||||||
| Expr1018722 | |||||||||
| Expr1145432 | |||||||||
| Expr2001196 | |||||||||
| Expr2019418 | |||||||||
| Drives_construct | WBCnstr00011715 | ||||||||
| WBCnstr00028267 | |||||||||
| Construct_product | WBCnstr00028267 | ||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (249) | |||||||||
| Interaction | WBInteraction000547389 | ||||||||
| WBInteraction000567156 | |||||||||
| Map_info | Map | IV | Position | 3.84937 | |||||
| Positive | Positive_clone | C28C12 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00058665 | ||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
