WormBase Tree Display for Gene: WBGene00016180
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WBGene00016180 | SMap | S_parent | Sequence | C28C12 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | srlf-3 | Person_evidence | WBPerson260 | |||||
Laboratory_evidence | OH | ||||||||
Sequence_name | C28C12.4 | ||||||||
Molecular_name | C28C12.4 | ||||||||
C28C12.4.1 | |||||||||
CE04111 | |||||||||
Other_name | C28C12.4 | ||||||||
CELE_C28C12.4 | Accession_evidence | NDB | BX284604 | ||||||
Public_name | srlf-3 | ||||||||
DB_info | Database | AceView | gene | 4J251 | |||||
WormQTL | gene | WBGene00016180 | |||||||
WormFlux | gene | WBGene00016180 | |||||||
NDB | locus_tag | CELE_C28C12.4 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00016180|UniProtKB=Q18280 | |||||||
family | PTHR21593 | ||||||||
NCBI | gene | 182978 | |||||||
RefSeq | protein | NM_069047.4 | |||||||
TREEFAM | TREEFAM_ID | TF316074 | |||||||
TrEMBL | UniProtAcc | Q18280 | |||||||
UniProt_GCRP | UniProtAcc | Q18280 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 28 May 2004 13:30:57 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
2 | 03 Oct 2022 15:59:20 | WBPerson21950 | Name_change | CGC_name | srlf-3 | ||||
Other_name | C28C12.4 | ||||||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | srlf | ||||||||
Allele | WBVar01500079 | ||||||||
WBVar01498996 | |||||||||
WBVar01499396 | |||||||||
WBVar00926983 | |||||||||
WBVar00926984 | |||||||||
WBVar00926985 | |||||||||
WBVar01794927 | |||||||||
WBVar01499633 | |||||||||
WBVar02153765 | |||||||||
WBVar01500245 | |||||||||
RNASeq_FPKM (74) | |||||||||
Ortholog (35) | |||||||||
Paralog (39) | |||||||||
Structured_description | Automated_description | Expressed in pharyngeal muscle cell and tail neurons. Is predicted to encode a protein with the following domains: SXP/RAL-2 family protein Ani s 5-like, metal-binding domain and SXP/RAL-2 family protein Ani s 5-like, cation-binding domain. | Paper_evidence | WBPaper00065943 | |||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | C28C12.4 | |||||||
Corresponding_transcript | C28C12.4.1 | ||||||||
Other_sequence (5) | |||||||||
Associated_feature | WBsf646167 | ||||||||
WBsf228687 | |||||||||
Experimental_info | RNAi_result | WBRNAi00029295 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00041401 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00011293 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr3883 | ||||||||
Expr1018722 | |||||||||
Expr1145432 | |||||||||
Expr2001196 | |||||||||
Expr2019418 | |||||||||
Drives_construct | WBCnstr00011715 | ||||||||
WBCnstr00028267 | |||||||||
Construct_product | WBCnstr00028267 | ||||||||
Microarray_results (19) | |||||||||
Expression_cluster (249) | |||||||||
Interaction | WBInteraction000547389 | ||||||||
WBInteraction000567156 | |||||||||
Map_info | Map | IV | Position | 3.84937 | |||||
Positive | Positive_clone | C28C12 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Reference | WBPaper00058665 | ||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |