WormBase Tree Display for Gene: WBGene00016116

WBGene00016116 SMap: S_parent: Sequence: C25H3
  Identity: Version: 1
    Name: Sequence_name: C25H3.7
      Molecular_name: C25H3.7a
        C25H3.7a.1
        CE02505
        C25H3.7b
      Other_name: CELE_C25H3.7 Accession_evidence: NDB BX284602
      Public_name: C25H3.7
    DB_info: Database: AceView gene 2F956
        WormQTL gene WBGene00016116
        WormFlux gene WBGene00016116
        NDB locus_tag CELE_C25H3.7
        Panther gene CAEEL|WormBase=WBGene00016116|UniProtKB=Q8MQC1
          family PTHR12289
        NCBI gene 173961
        RefSeq protein NM_001267173.2
            NR_155253.1
        TrEMBL UniProtAcc Q8MQC1
        UniProt_GCRP UniProtAcc Q8MQC1
        RNAcentral URSid URS0000D56C5E
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:30:57 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
    Status: Live
  Gene_info: Biotype: SO:0001217
    Allele (32)
    RNASeq_FPKM (74)
    GO_annotation: 00084530
    Contained_in_operon: CEOP2728
    Ortholog (32)
    Paralog (12)
    Structured_description: Automated_description: Predicted to be located in cytoplasm. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: C25H3.7a
    Corresponding_CDS_history: C25H3.7a:wp214
    Corresponding_transcript: C25H3.7b
      C25H3.7a.1
    Other_sequence (23)
    Associated_feature: WBsf665544
      WBsf665545
      WBsf665546
      WBsf665547
      WBsf987926
      WBsf1012249
      WBsf223081
      WBsf223082
      WBsf223083
  Experimental_info: RNAi_result: WBRNAi00115492 Inferred_automatically: RNAi_primary
      WBRNAi00072947 Inferred_automatically: RNAi_primary
      WBRNAi00041231 Inferred_automatically: RNAi_primary
      WBRNAi00115554 Inferred_automatically: RNAi_primary
      WBRNAi00072946 Inferred_automatically: RNAi_primary
      WBRNAi00011193 Inferred_automatically: RNAi_primary
      WBRNAi00029209 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1025357
      Expr1036885
      Expr1145271
      Expr2001116
      Expr2019337
    Drives_construct: WBCnstr00028314
    Construct_product: WBCnstr00028314
    Microarray_results (24)
    Expression_cluster: WBPaper00028451:Low_abundance_spermatogenesis_enriched
      WBPaper00031040:TGF-beta_adult_downregulated
      WBPaper00032528:L3_enriched
      WBPaper00033065:cyc-1(RNAi)_upregulated
      WBPaper00037950:AVA-neuron_L1-larva_expressed
      WBPaper00037950:BAG-neuron_blastula-embryo_expressed
      WBPaper00037950:coelomocytes_L1-larva_expressed
      WBPaper00037950:dopaminergic-neurons_L1-larva_expressed
      WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
      WBPaper00037950:hypodermis_L3-L4-larva_expressed
      WBPaper00037950:intestine_L1-larva_expressed
      WBPaper00038289:oocyte_protein
      WBPaper00040221:DAF-12_target_ALF4
      WBPaper00044426:rotenone_24h_upregulated
      WBPaper00044501:gld-1_let-7_regulated
      WBPaper00044736:flat_dev_expression
      WBPaper00045521:Gender_Neutral
      WBPaper00045774:clk-1_upregulated
      WBPaper00045974:NSM_enriched_totalRNA_RNAseq
      WBPaper00046012:tdp-1(ok803)_upregulated
      WBPaper00048926:miaserin_upregulated_adult-day5
      WBPaper00048988:neuron_expressed
      WBPaper00049290:rsks-1(sv31)_downregulated
      WBPaper00050344:ASER-neuron_enriched
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050726:OsmoticStress_regulated_Food
      WBPaper00050726:OsmoticStress_regulated_NoFood
      WBPaper00050990:hypodermis_expressed
      WBPaper00050990:intestine_expressed
      WBPaper00050990:NMDA-neuron_expressed
      WBPaper00051039:germline_enriched
      WBPaper00051404:alg-1(gk214)_upregulated
      WBPaper00053295:lin-22(ot269)_downregulated
      WBPaper00053302:alovudine_72h_regulated
      WBPaper00053302:zidovudine_72h_regulated
      WBPaper00053321:PGCs_enriched_NuGen
      WBPaper00053810:clk-1(qm30)_upregulated
      WBPaper00053810:isp-1(qm150)_upregulated
      WBPaper00053810:nuo-6(qm200)_upregulated
      WBPaper00055354:Rifampicin-Allantoin_upregulated
      WBPaper00055648:germline_expressed
      WBPaper00055862:antimycin_damt-1(gk961032)_regulated
      WBPaper00057140:meg-3(tm4259)_meg-4(ax2026)_downregulated
      WBPaper00057288:iff-1(RNAi)_upregulated_protein
      WBPaper00058598:sin-3(tm1276)_upregulated
      WBPaper00059328:mrps-5(RNAi)_upregulated_mRNA
      WBPaper00060100:SiNP_downregulated_mRNA
      WBPaper00061203:sin-3(tm1276)_downregulated
      WBPaper00061466:nath-10(icb99)_upregulated
      WBPaper00061527:F45H10.2-R53.4_21676
      WBPaper00062193:skn-1(RNAi)_downregulated
      WBPaper00062325:muscle_enriched_coding-RNA
      WBPaper00062498:PPM-1.D_interacting
      WBPaper00062554:MAGU-2_interacting
      WBPaper00062590:Aging_downregulated_hypodermis
      WBPaper00064071:NHR-49_interacting
      WBPaper00064088:Day-3-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
      WBPaper00064130:Beta-Amyloid_downregulated_protein
      WBPaper00065373:Cisplatin_downregulated_WT
      WBPaper00065993:glp-1(e2141)_downregulated
      WBPaper00025032:cluster_3
      WBPaper00025141:N2_Expressed_Genes
      WBPaper00025141:unc-4::GFP_Expressed_Genes
      WBPaper00026929:sir-2.1_overexpression_regulated
      WBPaper00026980:intestine_enriched
      WBPaper00027342:alpha-Synuclein(WT)_upregulated
      WBPaper00031003:24hr_muscle_enriched
      WBPaper00031003:total_muscle_enriched
      WBPaper00032948:StarveUp3
      WBPaper00035905:FBF-1_Associated
      WBPaper00037147:heatshock_upregulated
      WBPaper00041606:CE_B.thuringiensis-DB27_regulated
      WBPaper00041606:CE_X.nematophila_regulated
      WBPaper00041939:control_vs_UVC-EtBr-exposed_51h
      WBPaper00041939:UVC-EtBr-exposed_vs_EtBr-exposed_51h
      WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_51h
      WBPaper00045263:isp-1(qm150)_upregulated
      WBPaper00045263:nuo-6(qm200)_upregulated
      WBPaper00047070:xpa-1_UV_downregulated
      WBPaper00053236:Starvation_regulated_GR1307
      WBPaper00053236:Starvation_regulated_N2
      [cgc5767]:cluster_3
      [cgc5767]:expression_class_M
      [cgc5767]:expression_class_MD
      [cgc5767]:expression_class_MD_pd(53_min)
      [cgc5767]:expression_class_SM
      [cgc5767]:expression_class_SMD
    Interaction (48)
  Map_info: Positive: Positive_clone: C25H3 Inferred_automatically: From sequence, transcript, pseudogene data
    Interpolated_map_position: II -0.974271
  Reference: WBPaper00038491
    WBPaper00041771
    WBPaper00055090
  Method: Gene