WormBase Tree Display for Gene: WBGene00015971
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| WBGene00015971 | SMap | S_parent | Sequence | C18E3 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | swsn-2.2 | Person_evidence | WBPerson407 | |||||
| WBPerson552 | |||||||||
| Sequence_name | C18E3.2 | ||||||||
| Molecular_name | C18E3.2 | ||||||||
| C18E3.2.1 | |||||||||
| CE30249 | |||||||||
| Other_name | CELE_C18E3.2 | Accession_evidence | NDB | BX284601 | |||||
| Public_name | swsn-2.2 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:30:56 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 11 Feb 2011 15:09:46 | WBPerson2970 | Name_change | CGC_name | swsn-2.2 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | swsn | ||||||||
| Allele (31) | |||||||||
| Strain | WBStrain00029672 | ||||||||
| WBStrain00031318 | |||||||||
| WBStrain00037543 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (16) | |||||||||
| Contained_in_operon | CEOP1946 | ||||||||
| Ortholog (44) | |||||||||
| Paralog | WBGene00044072 | Caenorhabditis elegans | From_analysis | Inparanoid_8 | |||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00044585 | Caenorhabditis elegans | From_analysis | modENCODE_Pseudogenes | ||||||
| WBGene00020779 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00010523 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Concise_description | swsn-2.2 encodes a homolog of Swp73/BAF60, a component of the SWI/SNF complex that is conserved from yeast to mammals and that is involved in chromatin remodeling; swsn-2.2 is probably required during mitosis of the T cells for asymmetric cell division. | Paper_evidence | WBPaper00004350 | |||||
| Curator_confirmed | WBPerson1843 | ||||||||
| WBPerson567 | |||||||||
| Date_last_updated | 01 Aug 2011 00:00:00 | ||||||||
| Automated_description | Predicted to enable RNA polymerase II-specific DNA-binding transcription factor binding activity and transcription coregulator activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Located in condensed chromosome; nuclear envelope; and nucleoplasm. Expressed in several structures, including HSNL and HSNR. Used to study alcohol use disorder. Human ortholog(s) of this gene implicated in Coffin-Siris syndrome 11. Is an ortholog of human SMARCD1 (SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1); SMARCD2 (SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2); and SMARCD3 (SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Experimental_model | DOID:1574 | Homo sapiens | Paper_evidence | WBPaper00046494 | ||||
| Curator_confirmed | WBPerson324 | ||||||||
| Date_last_updated | 20 May 2019 00:00:00 | ||||||||
| Potential_model | EFO:MONDO:0009506 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:11107) | |||||
| DOID:0112372 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:11106) | ||||||
| Models_disease_asserted | WBDOannot00000665 | ||||||||
| Molecular_info | Corresponding_CDS | C18E3.2 | |||||||
| Corresponding_transcript | C18E3.2.1 | ||||||||
| Other_sequence (12) | |||||||||
| Associated_feature | WBsf643191 | ||||||||
| WBsf643192 | |||||||||
| WBsf656176 | |||||||||
| WBsf983356 | |||||||||
| WBsf217501 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00007940 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00040936 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00061241 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00093893 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00069103 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00016521 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00061240 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00093974 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00093943 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr16204 | ||||||||
| Expr16205 | |||||||||
| Expr1016633 | |||||||||
| Expr1036825 | |||||||||
| Expr1144983 | |||||||||
| Expr2017157 | |||||||||
| Expr2035293 | |||||||||
| Drives_construct | WBCnstr00017369 | ||||||||
| WBCnstr00028413 | |||||||||
| WBCnstr00042800 | |||||||||
| Construct_product | WBCnstr00028413 | ||||||||
| WBCnstr00042800 | |||||||||
| Regulate_expr_cluster | WBPaper00049018:swsn-2.2(RNAi)_downregulated | ||||||||
| WBPaper00049018:swsn-2.2(RNAi)_upregulated | |||||||||
| WBPaper00049018:SWSN-2.2_interacting | |||||||||
| Antibody | WBAntibody00002683 | ||||||||
| Microarray_results (24) | |||||||||
| Expression_cluster (135) | |||||||||
| Interaction (345) | |||||||||
| Map_info | Map | I | Position | -1.58056 | Error | 0.006827 | |||
| Positive | Positive_clone | C18E3 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00031554 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00043854 | |||||||||
| WBPaper00046494 | |||||||||
| WBPaper00049018 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00060275 | |||||||||
| WBPaper00065308 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
