WormBase Tree Display for Gene: WBGene00015909
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| WBGene00015909 | SMap | S_parent | Sequence | C17F4 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | clec-124 | Person_evidence | WBPerson2531 | |||||
| Sequence_name | C17F4.1 | ||||||||
| Molecular_name | C17F4.1 | ||||||||
| C17F4.1.1 | |||||||||
| CE52403 | |||||||||
| Other_name | CELE_C17F4.1 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | clec-124 | ||||||||
| DB_info | Database | AceView | gene | 2D541 | |||||
| WormQTL | gene | WBGene00015909 | |||||||
| WormFlux | gene | WBGene00015909 | |||||||
| NDB | locus_tag | CELE_C17F4.1 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00015909|UniProtKB=O16543 | |||||||
| family | PTHR23124 | ||||||||
| NCBI | gene | 182737 | |||||||
| RefSeq | protein | NM_001356828.2 | |||||||
| TrEMBL | UniProtAcc | O16543 | |||||||
| UniProt_GCRP | UniProtAcc | O16543 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:30:56 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 09 Oct 2007 15:40:27 | WBPerson2970 | Name_change | CGC_name | clec-124 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | clec | ||||||||
| Allele (100) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog | WBGene00135791 | Caenorhabditis japonica | From_analysis | Inparanoid_8 | |||||
| WBGene00119635 | Caenorhabditis japonica | From_analysis | Inparanoid_8 | ||||||
| CSP39.g21785 | Caenorhabditis waitukubuli | From_analysis | WormBase-Compara | ||||||
| chrII_pilon.g3919 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00119598 | Caenorhabditis japonica | From_analysis | WormBase-Compara | ||||||
| Structured_description | Automated_description | Enriched in intestine and in male based on RNA-seq and microarray studies. Is affected by several genes including daf-2; lin-4; and lin-14 based on microarray and RNA-seq studies. Is affected by six chemicals including aldicarb; Zidovudine; and allantoin based on microarray and RNA-seq studies. Is predicted to encode a protein with the following domains: C-type lectin-like/link domain superfamily; C-type lectin-like; and C-type lectin fold. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C17F4.1 | |||||||
| Corresponding_CDS_history | C17F4.1:wp261 | ||||||||
| Corresponding_transcript | C17F4.1.1 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00040819 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00112622 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00010917 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00029012 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1014959 | ||||||||
| Expr1036800 | |||||||||
| Expr1144860 | |||||||||
| Microarray_results (15) | |||||||||
| Expression_cluster | WBPaper00037682:sma-2_downregulated | ||||||||
| WBPaper00038061:aldicarb_upregulated | |||||||||
| WBPaper00038438:E.faecalis_24hr_upregulated_TilingArray | |||||||||
| WBPaper00041071:spe-44_downregulated | |||||||||
| WBPaper00045390:ubc-9(RNAi)_upregulated | |||||||||
| WBPaper00049545:jmjd-3.1(+)_downregulated | |||||||||
| WBPaper00050231:male_enriched | |||||||||
| WBPaper00053302:zidovudine_72h_regulated | |||||||||
| WBPaper00053909:N2_vs_CB4856_downregulated | |||||||||
| WBPaper00055354:Rapamycin-Allantoin_upregulated | |||||||||
| WBPaper00055386:daf-2(e1370)_downregulated | |||||||||
| WBPaper00055648:male-vas-deferens_expressed | |||||||||
| WBPaper00059328:mrps-5(RNAi)_downregulated_mRNA | |||||||||
| WBPaper00061527:srj-42-srw-113 | |||||||||
| WBPaper00061753:csr-1(tor159)_downregulated_20C | |||||||||
| WBPaper00061753:csr-1(tor159)_downregulated_25C | |||||||||
| WBPaper00062672:let-418(n3536)dcp-66(RNAi)_upregulated | |||||||||
| WBPaper00066110:tetraploid_vs_diploid_upregulated | |||||||||
| cgc4489_group_18 | |||||||||
| cgc4489_group_22 | |||||||||
| WBPaper00026929:Resveratrol_regulated_daf-16 | |||||||||
| WBPaper00026929:sir-2.1_overexpression_regulated | |||||||||
| WBPaper00026952:class_E | |||||||||
| WBPaper00026980:intestine_enriched | |||||||||
| WBPaper00036375:depleted_in_PVD_OLL | |||||||||
| WBPaper00040858:eQTL_age_regulated_aging | |||||||||
| WBPaper00040858:eQTL_regulated_aging | |||||||||
| WBPaper00040858:eQTL_regulated_old | |||||||||
| WBPaper00041939:control_vs_UVC-EtBr-exposed_24h | |||||||||
| WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_48h | |||||||||
| WBPaper00046548:dafachronic-acid_upregulated | |||||||||
| [cgc6390]:male_sex-enriched | |||||||||
| Map_info | Map | II | Position | -7.19839 | Error | 0.045024 | |||
| Positive | Positive_clone | C17F4 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
