WormBase Tree Display for Gene: WBGene00015350
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| WBGene00015350 | SMap | S_parent | Sequence | C02F5 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | fbxl-1 | Person_evidence | WBPerson105 | |||||
| Sequence_name | C02F5.7 | ||||||||
| Molecular_name | C02F5.7a | ||||||||
| C02F5.7a.1 | |||||||||
| CE24780 | |||||||||
| C02F5.7b | |||||||||
| CE30418 | |||||||||
| C02F5.7a.2 | |||||||||
| C02F5.7b.1 | |||||||||
| Other_name | cfl-1 | Paper_evidence | WBPaper00046873 | ||||||
| CELE_C02F5.7 | Accession_evidence | NDB | BX284603 | ||||||
| Public_name | fbxl-1 | ||||||||
| DB_info | Database | AceView | gene | 3J321 | |||||
| WormQTL | gene | WBGene00015350 | |||||||
| WormFlux | gene | WBGene00015350 | |||||||
| NDB | locus_tag | CELE_C02F5.7 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00015350|UniProtKB=P34284 | |||||||
| family | PTHR13318 | ||||||||
| NCBI | gene | 3564805 | |||||||
| RefSeq | protein | NM_171210.8 | |||||||
| NM_001392151.1 | |||||||||
| SwissProt | UniProtAcc | P34284 | |||||||
| TREEFAM | TREEFAM_ID | TF313434 | |||||||
| UniProt_GCRP | UniProtAcc | P34284 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:30:55 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 01 Jun 2015 15:07:11 | WBPerson2970 | Name_change | CGC_name | fbxl-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | fbxl | ||||||||
| Allele (65) | |||||||||
| Strain | WBStrain00037639 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (15) | |||||||||
| Contained_in_operon | CEOP3488 | ||||||||
| Ortholog (45) | |||||||||
| Paralog (22) | |||||||||
| Structured_description | Concise_description | fbxl-1 encodes the sole C. elegans leucine-rich repeat (LRR)-type F-box protein that is equally related to mammalian FBXL2 and FBXL20; fbxl-1(RNAi) results in animals with altered defecation rhythm and decreased dauer formation upon treatment with dauer pheromone (daumone); an fbxl-1 promoter::gfp fusion is expressed in the anterior and posterior regions of the worm, specifically around the amphids and anal sphincter, respectively. | Paper_evidence | WBPaper00012854 | |||||
| WBPaper00046873 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| WBPerson567 | |||||||||
| Date_last_updated | 02 Jun 2015 00:00:00 | ||||||||
| Automated_description | Involved in several processes, including dauer entry; defecation rhythm; and regulation of defecation rhythm. Located in perikaryon and plasma membrane bounded cell projection. Is an ortholog of human FBXL2 (F-box and leucine rich repeat protein 2) and FBXL20 (F-box and leucine rich repeat protein 20). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C02F5.7a | |||||||
| C02F5.7b | |||||||||
| Corresponding_transcript | C02F5.7a.1 | ||||||||
| C02F5.7a.2 | |||||||||
| C02F5.7b.1 | |||||||||
| Other_sequence (28) | |||||||||
| Associated_feature | WBsf645397 | ||||||||
| WBsf659241 | |||||||||
| WBsf993274 | |||||||||
| WBsf993275 | |||||||||
| WBsf1015376 | |||||||||
| WBsf225373 | |||||||||
| WBsf225374 | |||||||||
| WBsf225375 | |||||||||
| Experimental_info | RNAi_result (12) | ||||||||
| Expr_pattern | Expr1019528 | ||||||||
| Expr1036576 | |||||||||
| Expr1143567 | |||||||||
| Expr2011740 | |||||||||
| Expr2029978 | |||||||||
| Drives_construct | WBCnstr00028911 | ||||||||
| Construct_product | WBCnstr00028911 | ||||||||
| Microarray_results (35) | |||||||||
| Expression_cluster (188) | |||||||||
| Interaction (96) | |||||||||
| Map_info | Map | III | Position | -0.356302 | |||||
| Positive | Positive_clone | C02F5 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00012854 | ||||||||
| WBPaper00034662 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00046873 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00055787 | |||||||||
| WBPaper00064447 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
