WormBase Tree Display for Gene: WBGene00015350

WBGene00015350 SMap: S_parent: Sequence: C02F5
  Identity: Version: 2
    Name: CGC_name: fbxl-1 Person_evidence: WBPerson105
      Sequence_name: C02F5.7
      Molecular_name: C02F5.7a
        C02F5.7a.1
        CE24780
        C02F5.7b
        CE30418
        C02F5.7a.2
        C02F5.7b.1
      Other_name: cfl-1 Paper_evidence: WBPaper00046873
        CELE_C02F5.7 Accession_evidence: NDB BX284603
      Public_name: fbxl-1
    DB_info: Database: AceView gene 3J321
        WormQTL gene WBGene00015350
        WormFlux gene WBGene00015350
        NDB locus_tag CELE_C02F5.7
        Panther gene CAEEL|WormBase=WBGene00015350|UniProtKB=P34284
          family PTHR13318
        NCBI gene 3564805
        RefSeq protein NM_171210.8
            NM_001392151.1
        SwissProt UniProtAcc P34284
        TREEFAM TREEFAM_ID TF313434
        UniProt_GCRP UniProtAcc P34284
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:30:55 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 01 Jun 2015 15:07:11 WBPerson2970 Name_change: CGC_name: fbxl-1
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: fbxl
    Allele (65)
    Strain: WBStrain00037639
    RNASeq_FPKM (74)
    GO_annotation (15)
    Contained_in_operon: CEOP3488
    Ortholog: WBGene00036539 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00054767 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00142598 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00124114 Caenorhabditis japonica From_analysis: Inparanoid_8
            WormBase-Compara
      WBGene00222182 Brugia malayi From_analysis: WormBase-Compara
      WBGene00230006 Brugia malayi From_analysis: WormBase-Compara
      WBGene00230825 Brugia malayi From_analysis: WormBase-Compara
      CBOVI.g5693 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g15632 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP21.g7685 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g11523 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g16462 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP31.g1382 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g3234 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g4910 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g156 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g8220 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00142.g5471 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-fbxl-1 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold78.g484 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00014.g946 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_19675 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_009778 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g08268 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g5542 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_30231400 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrIII_pilon.g8332 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00243799 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00244841 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00245471 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00248144 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00284722 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00262996 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00288940 Trichuris muris From_analysis: WormBase-Compara
      SGD:S000003813 Saccharomyces cerevisiae From_analysis: Inparanoid
            OMA
      SGD:S000003850 Saccharomyces cerevisiae From_analysis: EnsEMBL-Compara
            OrthoInspector
      FB:FBgn0033639 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      ZFIN:ZDB-GENE-030925-12 Danio rerio From_analysis: Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      ZFIN:ZDB-GENE-081031-27 Danio rerio From_analysis: Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      HGNC:13598 Homo sapiens From_analysis: Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      HGNC:24679 Homo sapiens From_analysis: Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      MGI:1919429 Mus musculus From_analysis: Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      MGI:1919444 Mus musculus From_analysis: Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      RGD:621722 Rattus norvegicus From_analysis: OrthoFinder
            OrthoInspector
            PhylomeDB
      RGD:1562243 Rattus norvegicus From_analysis: Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
    Paralog (22)
    Structured_description: Concise_description: fbxl-1 encodes the sole C. elegans leucine-rich repeat (LRR)-type F-box protein that is equally related to mammalian FBXL2 and FBXL20; fbxl-1(RNAi) results in animals with altered defecation rhythm and decreased dauer formation upon treatment with dauer pheromone (daumone); an fbxl-1 promoter::gfp fusion is expressed in the anterior and posterior regions of the worm, specifically around the amphids and anal sphincter, respectively. Paper_evidence: WBPaper00012854
            WBPaper00046873
          Curator_confirmed: WBPerson1843
            WBPerson567
          Date_last_updated: 02 Jun 2015 00:00:00
      Automated_description: Involved in several processes, including dauer entry; defecation rhythm; and regulation of defecation rhythm. Located in perikaryon and plasma membrane bounded cell projection. Is an ortholog of human FBXL2 (F-box and leucine rich repeat protein 2) and FBXL20 (F-box and leucine rich repeat protein 20). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: C02F5.7a
      C02F5.7b
    Corresponding_transcript: C02F5.7a.1
      C02F5.7a.2
      C02F5.7b.1
    Other_sequence (28)
    Associated_feature: WBsf645397
      WBsf659241
      WBsf993274
      WBsf993275
      WBsf1015376
      WBsf225373
      WBsf225374
      WBsf225375
  Experimental_info: RNAi_result (12)
    Expr_pattern: Expr1019528
      Expr1036576
      Expr1143567
      Expr2011740
      Expr2029978
    Drives_construct: WBCnstr00028911
    Construct_product: WBCnstr00028911
    Microarray_results (35)
    Expression_cluster (188)
    Interaction (96)
  Map_info: Map: III Position: -0.356302
    Positive: Positive_clone: C02F5 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00012854
    WBPaper00034662
    WBPaper00038491
    WBPaper00046873
    WBPaper00055090
    WBPaper00055787
    WBPaper00064447
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene