WormBase Tree Display for Gene: WBGene00014826
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| WBGene00014826 | SMap | S_parent | Sequence | R13H4 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | ||||||||
| Name | Sequence_name | R13H4.2 | ||||||||
| Molecular_name (11) | ||||||||||
| Other_name | CELE_R13H4.2 | Accession_evidence | NDB | BX284605 | ||||||
| Public_name | R13H4.2 | |||||||||
| DB_info | Database | AceView | gene | 5M317 | ||||||
| WormFlux | gene | WBGene00014826 | ||||||||
| NDB | locus_tag | CELE_R13H4.2 | ||||||||
| NCBI | gene | 6418761 | ||||||||
| RefSeq | protein | NM_001276935.3 | ||||||||
| NR_023977.1 | ||||||||||
| NR_102077.1 | ||||||||||
| NM_001269449.3 | ||||||||||
| NM_001129518.5 | ||||||||||
| TREEFAM | TREEFAM_ID | TF353342 | ||||||||
| TrEMBL | UniProtAcc | K8ESK7 | ||||||||
| A5Z2W3 | ||||||||||
| H9G321 | ||||||||||
| UniProt_GCRP | UniProtAcc | A5Z2W3 | ||||||||
| RNAcentral | URSid | URS000012CBA4 | ||||||||
| URS0000290281 | ||||||||||
| Species | Caenorhabditis elegans | |||||||||
| History | Version_change | 1 | 27 May 2004 15:23:24 | WBPerson1971 | Event | Imported | Initial conversion from Pseudogene class of WS125 | |||
| 2 | 04 Jun 2007 09:52:57 | WBPerson4025 | Event | Changed_class | Pseudogene | CDS | ||||
| Status | Live | |||||||||
| Gene_info | Biotype | SO:0001217 | ||||||||
| Allele (30) | ||||||||||
| Strain | WBStrain00035513 | |||||||||
| WBStrain00035535 | ||||||||||
| RNASeq_FPKM (74) | ||||||||||
| Ortholog (23) | ||||||||||
| Paralog | WBGene00006408 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| WormBase-Compara | ||||||||||
| Structured_description | Automated_description | Enriched in head mesodermal cell; muscle cell; rectal epithelial cell; and rectum based on RNA-seq; single-cell RNA-seq; and microarray studies. Is affected by several genes including daf-16; daf-2; and skn-1 based on proteomic; microarray; and RNA-seq studies. Is affected by fifteen chemicals including 1-methylnicotinamide; nicotinic acid; and D-glucose based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domain: Phosphorylation site. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | |||||||||
| WBPerson37462 | ||||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | |||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | |||||||||
| Molecular_info | Corresponding_CDS | R13H4.2a | ||||||||
| R13H4.2c | ||||||||||
| R13H4.2e | ||||||||||
| Corresponding_CDS_history | R13H4.2:wp87 | |||||||||
| Corresponding_transcript | R13H4.2b | |||||||||
| R13H4.2d | ||||||||||
| R13H4.2a.1 | ||||||||||
| R13H4.2c.1 | ||||||||||
| R13H4.2e.1 | ||||||||||
| Corresponding_pseudogene_history | R13H4.2:wp177 | |||||||||
| Other_sequence (45) | ||||||||||
| Associated_feature | WBsf647302 | |||||||||
| WBsf232555 | ||||||||||
| Experimental_info | RNAi_result | WBRNAi00034929 | Inferred_automatically | RNAi_primary | ||||||
| Expr_pattern | Expr1011782 | |||||||||
| Expr1036404 | ||||||||||
| Expr1155582 | ||||||||||
| Expr2005638 | ||||||||||
| Expr2023853 | ||||||||||
| Drives_construct | WBCnstr00029176 | |||||||||
| Construct_product | WBCnstr00029176 | |||||||||
| Microarray_results (20) | ||||||||||
| Expression_cluster (185) | ||||||||||
| SAGE_tag | SAGE:gaaaggccacgagaaag | Strand | Antisense | |||||||
| SAGE:atggagtgccagatgat | Strand | Antisense | ||||||||
| SAGE:tacaagaaca | Strand | Sense | ||||||||
| Unambiguously_mapped | ||||||||||
| SAGE:cctcttcttg | Strand | Antisense | ||||||||
| SAGE:gaaaggccac | Strand | Antisense | ||||||||
| Interaction | WBInteraction000552227 | |||||||||
| WBInteraction000552738 | ||||||||||
| WBInteraction000562261 | ||||||||||
| WBInteraction000563563 | ||||||||||
| WBInteraction000564182 | ||||||||||
| WBInteraction000566886 | ||||||||||
| WBInteraction000567100 | ||||||||||
| WBInteraction000581852 | ||||||||||
| WBInteraction000583353 | ||||||||||
| WBInteraction000585662 | ||||||||||
| Map_info | Positive | Positive_clone | R13H4 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Interpolated_map_position | V | 3.4193 | ||||||||
| Reference | WBPaper00041771 | |||||||||
| Method | Gene |
