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WormBase Tree Display for Gene: WBGene00013998

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Name Class

WBGene00013998SMapS_parentSequenceZK550
IdentityVersion2
NameCGC_namegtf-2E1
Sequence_nameZK550.4
Molecular_nameZK550.4
ZK550.4.1
CE16735
Other_nameTFIIE-alphaAccession_evidenceEMBLY08816
CELE_ZK550.4Accession_evidenceNDBBX284604
Public_namegtf-2E1
DB_infoDatabaseAceViewgene4S201
WormQTLgeneWBGene00013998
WormFluxgeneWBGene00013998
NDBlocus_tagCELE_ZK550.4
PanthergeneCAEEL|WormBase=WBGene00013998|UniProtKB=G5EG49
familyPTHR13097
NCBIgene178502
RefSeqproteinNM_070659.9
TREEFAMTREEFAM_IDTF313429
TrEMBLUniProtAccG5EG49
UniProt_GCRPUniProtAccG5EG49
SpeciesCaenorhabditis elegans
HistoryVersion_change126 May 2004 16:54:55WBPerson1971EventImportedInitial conversion from CDS class of WS125
205 Jul 2018 12:31:10WBPerson1983Name_changeCGC_namegtf-2E1
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classgtf
Allele (130)
RNASeq_FPKM (74)
GO_annotation00019500
00019501
00019502
00019503
00019504
00120728
Contained_in_operonCEOP4600
Ortholog (32)
Structured_descriptionConcise_descriptionZK550.4 encodes the C. elegans ortholog of the TFIIE alpha subunit; when expressed in vitro with the TFIIE beta subunit encoded by F54D5.11, the protein product of ZK550.4 supports transcription initiation; the protein products of ZK550.4 and F54D5.11 physically interact in vitro.Paper_evidenceWBPaper00004472
Curator_confirmedWBPerson1843
Date_last_updated28 Feb 2011 00:00:00
Automated_descriptionPredicted to enable RNA polymerase II complex binding activity. Involved in transcription initiation at RNA polymerase II promoter. Part of transcription factor TFIIE complex. Is an ortholog of human GTF2E1 (general transcription factor IIE subunit 1).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSZK550.4
Corresponding_transcriptZK550.4.1
Other_sequenceJI465943.1
Oden_isotig21245
Tcol_isotig20329
CBC00710_1
Dviv_isotig23189
Associated_featureWBsf999010
WBsf229620
WBsf229621
Experimental_infoRNAi_resultWBRNAi00108538Inferred_automaticallyRNAi_primary
WBRNAi00027079Inferred_automaticallyRNAi_primary
WBRNAi00111766Inferred_automaticallyRNAi_primary
WBRNAi00061604Inferred_automaticallyRNAi_primary
WBRNAi00059514Inferred_automaticallyRNAi_primary
WBRNAi00071503Inferred_automaticallyRNAi_primary
WBRNAi00030269Inferred_automaticallyRNAi_primary
WBRNAi00009477Inferred_automaticallyRNAi_primary
WBRNAi00116057Inferred_automaticallyRNAi_primary
Expr_patternExpr1018374
Expr1036256
Expr1162931
Expr2008874
Expr2027107
AntibodyWBAntibody00000333
Microarray_results (22)
Expression_cluster (98)
Interaction (77)
Map_infoPositivePositive_cloneZK550Inferred_automaticallyFrom sequence, transcript, pseudogene data
Interpolated_map_positionIV16.2846
ReferenceWBPaper00004472
WBPaper00038491
WBPaper00055090
WBPaper00062203
MethodGene