WormBase Tree Display for Gene: WBGene00013998
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WBGene00013998 | SMap | S_parent | Sequence | ZK550 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | gtf-2E1 | |||||||
Sequence_name | ZK550.4 | ||||||||
Molecular_name | ZK550.4 | ||||||||
ZK550.4.1 | |||||||||
CE16735 | |||||||||
Other_name | TFIIE-alpha | Accession_evidence | EMBL | Y08816 | |||||
CELE_ZK550.4 | Accession_evidence | NDB | BX284604 | ||||||
Public_name | gtf-2E1 | ||||||||
DB_info | Database | AceView | gene | 4S201 | |||||
WormQTL | gene | WBGene00013998 | |||||||
WormFlux | gene | WBGene00013998 | |||||||
NDB | locus_tag | CELE_ZK550.4 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00013998|UniProtKB=G5EG49 | |||||||
family | PTHR13097 | ||||||||
NCBI | gene | 178502 | |||||||
RefSeq | protein | NM_070659.9 | |||||||
TREEFAM | TREEFAM_ID | TF313429 | |||||||
TrEMBL | UniProtAcc | G5EG49 | |||||||
UniProt_GCRP | UniProtAcc | G5EG49 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 26 May 2004 16:54:55 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
2 | 05 Jul 2018 12:31:10 | WBPerson1983 | Name_change | CGC_name | gtf-2E1 | ||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | gtf | ||||||||
Allele (130) | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00019500 | ||||||||
00019501 | |||||||||
00019502 | |||||||||
00019503 | |||||||||
00019504 | |||||||||
00120728 | |||||||||
Contained_in_operon | CEOP4600 | ||||||||
Ortholog (32) | |||||||||
Structured_description | Concise_description | ZK550.4 encodes the C. elegans ortholog of the TFIIE alpha subunit; when expressed in vitro with the TFIIE beta subunit encoded by F54D5.11, the protein product of ZK550.4 supports transcription initiation; the protein products of ZK550.4 and F54D5.11 physically interact in vitro. | Paper_evidence | WBPaper00004472 | |||||
Curator_confirmed | WBPerson1843 | ||||||||
Date_last_updated | 28 Feb 2011 00:00:00 | ||||||||
Automated_description | Predicted to enable RNA polymerase II complex binding activity. Involved in transcription initiation at RNA polymerase II promoter. Part of transcription factor TFIIE complex. Is an ortholog of human GTF2E1 (general transcription factor IIE subunit 1). | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | ZK550.4 | |||||||
Corresponding_transcript | ZK550.4.1 | ||||||||
Other_sequence | JI465943.1 | ||||||||
Oden_isotig21245 | |||||||||
Tcol_isotig20329 | |||||||||
CBC00710_1 | |||||||||
Dviv_isotig23189 | |||||||||
Associated_feature | WBsf999010 | ||||||||
WBsf229620 | |||||||||
WBsf229621 | |||||||||
Experimental_info | RNAi_result | WBRNAi00108538 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00027079 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00111766 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00061604 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00059514 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00071503 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00030269 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00009477 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00116057 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr1018374 | ||||||||
Expr1036256 | |||||||||
Expr1162931 | |||||||||
Expr2008874 | |||||||||
Expr2027107 | |||||||||
Antibody | WBAntibody00000333 | ||||||||
Microarray_results (22) | |||||||||
Expression_cluster (98) | |||||||||
Interaction (77) | |||||||||
Map_info | Positive | Positive_clone | ZK550 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||
Interpolated_map_position | IV | 16.2846 | |||||||
Reference | WBPaper00004472 | ||||||||
WBPaper00038491 | |||||||||
WBPaper00055090 | |||||||||
WBPaper00062203 | |||||||||
Method | Gene |