WormBase Tree Display for Gene: WBGene00013998

WBGene00013998 SMap: S_parent: Sequence: ZK550
  Identity: Version: 2
    Name: CGC_name: gtf-2E1
      Sequence_name: ZK550.4
      Molecular_name: ZK550.4
        ZK550.4.1
        CE16735
      Other_name: TFIIE-alpha Accession_evidence: EMBL Y08816
        CELE_ZK550.4 Accession_evidence: NDB BX284604
      Public_name: gtf-2E1
    DB_info: Database: AceView gene 4S201
        WormQTL gene WBGene00013998
        WormFlux gene WBGene00013998
        NDB locus_tag CELE_ZK550.4
        Panther gene CAEEL|WormBase=WBGene00013998|UniProtKB=G5EG49
          family PTHR13097
        NCBI gene 178502
        RefSeq protein NM_070659.9
        TREEFAM TREEFAM_ID TF313429
        TrEMBL UniProtAcc G5EG49
        UniProt_GCRP UniProtAcc G5EG49
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:55 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 05 Jul 2018 12:31:10 WBPerson1983 Name_change: CGC_name: gtf-2E1
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: gtf
    Allele (130)
    RNASeq_FPKM (74)
    GO_annotation: 00019500
      00019501
      00019502
      00019503
      00019504
      00120728
    Contained_in_operon: CEOP4600
    Ortholog: WBGene00061387 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            WormBase-Compara
      WBGene00023765 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
      WBGene00159645 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            WormBase-Compara
      WBGene00270564 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00227758 Brugia malayi From_analysis: WormBase-Compara
      CBOVI.g10836 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g5266 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g4591 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g9113 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g4273 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g26870 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g3822 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g16397 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g7541 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g24001 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00107.g4506 Caenorhabditis angaria From_analysis: WormBase-Compara
      Csp11.Scaffold171.g658 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_01462.g21063 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_13834 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_012093 Caenorhabditis remanei From_analysis: WormBase-Compara
      Pan_g4781 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_40205600 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrIV_pilon.g12856 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00247477 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00263325 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00284941 Trichuris muris From_analysis: WormBase-Compara
      SGD:S000001511 Saccharomyces cerevisiae From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
      FB:FBgn0015828 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      ZFIN:ZDB-GENE-041210-221 Danio rerio From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      HGNC:4650 Homo sapiens From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      MGI:1921447 Mus musculus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      RGD:1306851 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
    Structured_description: Concise_description: ZK550.4 encodes the C. elegans ortholog of the TFIIE alpha subunit; when expressed in vitro with the TFIIE beta subunit encoded by F54D5.11, the protein product of ZK550.4 supports transcription initiation; the protein products of ZK550.4 and F54D5.11 physically interact in vitro. Paper_evidence: WBPaper00004472
          Curator_confirmed: WBPerson1843
          Date_last_updated: 28 Feb 2011 00:00:00
      Automated_description: Predicted to enable RNA polymerase II complex binding activity. Involved in transcription initiation at RNA polymerase II promoter. Part of transcription factor TFIIE complex. Is an ortholog of human GTF2E1 (general transcription factor IIE subunit 1). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: ZK550.4
    Corresponding_transcript: ZK550.4.1
    Other_sequence: JI465943.1
      Oden_isotig21245
      Tcol_isotig20329
      CBC00710_1
      Dviv_isotig23189
    Associated_feature: WBsf999010
      WBsf229620
      WBsf229621
  Experimental_info: RNAi_result: WBRNAi00108538 Inferred_automatically: RNAi_primary
      WBRNAi00027079 Inferred_automatically: RNAi_primary
      WBRNAi00111766 Inferred_automatically: RNAi_primary
      WBRNAi00061604 Inferred_automatically: RNAi_primary
      WBRNAi00059514 Inferred_automatically: RNAi_primary
      WBRNAi00071503 Inferred_automatically: RNAi_primary
      WBRNAi00030269 Inferred_automatically: RNAi_primary
      WBRNAi00009477 Inferred_automatically: RNAi_primary
      WBRNAi00116057 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1018374
      Expr1036256
      Expr1162931
      Expr2008874
      Expr2027107
    Antibody: WBAntibody00000333
    Microarray_results (22)
    Expression_cluster (98)
    Interaction (77)
  Map_info: Positive: Positive_clone: ZK550 Inferred_automatically: From sequence, transcript, pseudogene data
    Interpolated_map_position: IV 16.2846
  Reference: WBPaper00004472
    WBPaper00038491
    WBPaper00055090
    WBPaper00062203
  Method: Gene