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WormBase Tree Display for Gene: WBGene00013727

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Name Class

WBGene00013727SMapS_parentSequenceCHROMOSOME_III
IdentityVersion1
NameSequence_nameY111B2A.1
Molecular_nameY111B2A.1
Y111B2A.1.1
CE34107
Other_nameY111B2A.aCurator_confirmedWBPerson1983
RemarkOld cosmid naming mapped via unique overlapping PCR_product on CDSs
CELE_Y111B2A.1Accession_evidenceNDBBX284603
Public_nameY111B2A.1
DB_infoDatabase (11)
SpeciesCaenorhabditis elegans
HistoryVersion_change126 May 2004 16:54:55WBPerson1971EventImportedInitial conversion from CDS class of WS125
StatusLive
Gene_infoBiotypeSO:0001217
Allele (99)
StrainWBStrain00037552
RNASeq_FPKM (74)
GO_annotation (14)
Ortholog (87)
ParalogWBGene00006517Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00022218Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
Panther
WBGene00185089Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
Panther
WormBase-Compara
WBGene00001994Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00003149Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00003150Caenorhabditis elegansFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to enable protein serine/threonine kinase activity. Predicted to be involved in regulation of RNA splicing. Predicted to be located in nucleus. Is an ortholog of human CLK1 (CDC like kinase 1).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSY111B2A.1
Corresponding_CDS_historyY111B2A.1:wp101
Corresponding_transcriptY111B2A.1.1
Other_sequenceCRC03105_1
Associated_featureWBsf227670
Experimental_infoRNAi_result (11)
Expr_patternExpr1023827
Expr1036146
Expr1158871
Expr2007020
Expr2025246
Drives_constructWBCnstr00029538
Construct_productWBCnstr00029538
Microarray_results (17)
Expression_clusterWBPaper00037950:A-class-motor-neurons_L1-larva_expressed
WBPaper00037950:all-neurons_L1-larva_expressed
WBPaper00037950:AVA-neuron_L1-larva_expressed
WBPaper00037950:AVE-neuron_L1-larva_expressed
WBPaper00037950:bodywall-muscle_L1-larva_expressed
WBPaper00037950:CEP-sheath-cells_Day1-adult_expressed
WBPaper00037950:coelomocytes_L1-larva_expressed
WBPaper00037950:germline-precursors_blastula-embryo_expressed
WBPaper00037950:germline-precursors_embryo_enriched
WBPaper00037950:glr-1(+)-neurons_L2-larva_expressed
WBPaper00037950:hypodermis_L1-larva_expressed
WBPaper00037950:intestine_L1-larva_expressed
WBPaper00037950:pharyngeal-muscle_L1-larva_expressed
WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed
WBPaper00038168:lin-35_upregulated
WBPaper00040560:hpl-2_L3_upregulated
WBPaper00044656:tatn-1(qd182)_downregulated
WBPaper00044736:flat_dev_expression
WBPaper00045521:Gender_Neutral
WBPaper00046497:B.thuringiensis_0.5mix_downregulated_6h
WBPaper00046805:csr-1(RNAi)_upregulated_Set1
WBPaper00048611:MnCl2_downregulated
WBPaper00048988:neuron_expressed
WBPaper00049498:npr-1(ur89)_regulated_6
WBPaper00049954:BPS_downregulated
WBPaper00050080:rbr-2(tm3141)_downregulated
WBPaper00050193:lsm-1(tm3585)_upregulated_L3
WBPaper00050193:met-2(n4256)set-25(n5021)_upregulated_L1
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050488:mir-34(OverExpression)_vs_N2_regulated_adult_20C
WBPaper00050488:N2_vs_mir-34(gk437)_regulated_dauer_20C
WBPaper00050522:mafr-1(tm6082)_downregulated
WBPaper00050726:OsmoticStress_regulated_Food
WBPaper00050726:starvation_regulated_LowSalt
WBPaper00050859:downregulated_P-granule(-)GFP(+)_vs_control_day2-adult
WBPaper00051039:germline_enriched
WBPaper00053184:sma-2(rax5)_downregulated
WBPaper00053184:sma-4(rax3)_downregulated
WBPaper00053295:lin-22(icb38)_downregulated
WBPaper00053321:PGCs_enriched_NuGen
WBPaper00053388:dauer_regulated_Cluster2
WBPaper00053599:oocyte_vs_mitosis_upregulated
WBPaper00053606:N2_vs_elt-2(ca15);elt-7(tm840)_upregulated
WBPaper00053810:daf-2(e1370)_downregulated
WBPaper00055334:DLC-1_interacting
WBPaper00055354:Rapamycin-Allantoin_upregulated
WBPaper00055354:Rapamycin-Psora-Allantoin_downregulated
WBPaper00055354:Rapamycin-Rifampicin-Psora_downregulated
WBPaper00055354:Rapamycin-Rifampicin_downregulated
WBPaper00055482:pmt-2(RNAi)_downregulated
WBPaper00055648:germline_expressed
WBPaper00055862:antimycin_damt-1(gk961032)_regulated
WBPaper00056090:E.faecalis_downregulated_hpx-2(dg047)
WBPaper00056443:sek-1(km4)_downregulated
WBPaper00056471:aak-1(tm1944);aak-2(ok524)_downregulated
WBPaper00056471:S.aureus-4h_downregulated_N2
WBPaper00057041:spc-1(cas971)_upregulated
WBPaper00058691:sin-3(tm1276)_upregulated
WBPaper00058948:PA14_upregulated
WBPaper00059567:olrn-1(ums9)_regulated
WBPaper00059609:malt-1_ilc-17.1_nfki-1_downregulated
WBPaper00059739:hira-1(gk835598)_upregulated_L1
WBPaper00059739:hira-1(gk835598)_upregulated_L4
WBPaper00060014:set-2(tm1630)_upregulated
WBPaper00060445:ikb-1(nr2027)_upregulated_L4
WBPaper00060811:L1_vs_adult_downregulated_neural
WBPaper00060886:met-2(n4256)_upregulated
WBPaper00060909:atfs-1(cmh15)_upregulated
WBPaper00061341:28C_24h_downregulated
WBPaper00061527:puf-3-oma-2_18268
WBPaper00061902:camt-1(ok515)_regulated_URX-AQR-PQR
WBPaper00062002:L3_secretome
WBPaper00062056:dpl-1(n2994)_upregulated
WBPaper00062056:efl-1(se1)_upregulated
WBPaper00062056:lin-35(n745)_upregulated
WBPaper00062056:lin-36(n766)_upregulated
WBPaper00062056:lin-36(we36)_upregulated
WBPaper00062056:met-2(n4256)_upregulated
WBPaper00062325:muscle_depleted_coding-RNA
WBPaper00064088:Day-1-adult_vs_L4_upregulated_daf-16(mu86);glp-1(e2141)
WBPaper00064088:Day-1-adult_vs_L4_upregulated_fem-3(q20)
WBPaper00064088:Day-3-adult_vs_L4_upregulated_fem-3(q20)
WBPaper00064107:lin-35(n745)_upregulated
WBPaper00064716:paraquat_upregulated
WBPaper00064871:hypoxia_upregulated_F1
WBPaper00065841:39_0
WBPaper00065975:P-body_vs_WholeAnimal_enriched
WBPaper00065984:pals-17(syb3980)_upregulated
WBPaper00065993:glp-1(e2141)_downregulated
WBPaper00066146:germline-inx-14(RNAi)_downregulated_PA14
WBPaper00026929:Resveratrol_regulated_daf-16
WBPaper00026929:sir-2.1_overexpression_regulated
WBPaper00032165:A_to_C_transit_decreased
WBPaper00032165:differentially_expressed_with_age_medoid_5
WBPaper00034757:down_by_oxidative_stress
WBPaper00035905:FBF-1_Associated
WBPaper00036130:mir-243_down_regulated
WBPaper00036286:Pattern_H
WBPaper00037695:CC_3-day
WBPaper00040184:hcf-1nc_sir-2.1nc_daf-2down
WBPaper00041002:HF_3d_2.0mM_Down
WBPaper00041606:CE_X.nematophila_regulated
WBPaper00045263:0.1mM-paraquat_upregulated
WBPaper00048989:eat-2(ad465)_rapamycin_upregulated
WBPaper00048989:N2_allantoin_upregulated
WBPaper00051387:Triclosan_downregulated
[cgc5767]:cluster_80
[cgc5767]:expression_class_E
[cgc5767]:expression_class_E_pi(122_min)
[cgc5767]:expression_class_SE
[cgc5767]:expression_class_SE_pi(122_min)
[cgc6390]:intrinsic
InteractionWBInteraction000544098
Map_infoPositivePositive_cloneY111B2AInferred_automaticallyFrom sequence, transcript, pseudogene data
Interpolated_map_positionIII17.9692
ReferenceWBPaper00005736
WBPaper00027258
MethodGene