WormBase Tree Display for Gene: WBGene00013702

WBGene00013702 SMap: S_parent: Sequence: Y106G6D
  Identity: Version: 1
    Name: Sequence_name: Y106G6D.6
      Molecular_name: Y106G6D.6
        Y106G6D.6.1
        CE41713
      Other_name: CELE_Y106G6D.6 Accession_evidence: NDB BX284601
      Public_name: Y106G6D.6
    DB_info: Database: AceView gene 1K694
            1K696
        WormQTL gene WBGene00013702
        WormFlux gene WBGene00013702
        NDB locus_tag CELE_Y106G6D.6
        Panther gene CAEEL|WormBase=WBGene00013702|UniProtKB=Q9XX58
          family PTHR21749
        NCBI gene 190917
        RefSeq protein NM_060268.9
        TREEFAM TREEFAM_ID TF319409
        TrEMBL UniProtAcc Q9XX58
        UniProt_GCRP UniProtAcc Q9XX58
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:55 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
    Status: Live
  Gene_info: Biotype: SO:0001217
    Allele (18)
    RNASeq_FPKM (74)
    Ortholog: WBGene00033195 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            Inparanoid_8
            WormBase-Compara
      WBGene00062425 Caenorhabditis remanei From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00157720 Caenorhabditis brenneri From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00207874 Caenorhabditis japonica From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      CBOVI.g9992 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g8027 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g21617 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP29.g21452 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g5842 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g8618 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g22086 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP40.g21014 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cni-Y106G6D.6 Caenorhabditis nigoni From_analysis: WormBase-Compara
      FL83_18852 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_002310 Caenorhabditis remanei From_analysis: WormBase-Compara
      Sp34_10183700 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrI_pilon.g1974 Caenorhabditis elegans From_analysis: WormBase-Compara
    Paralog: WBGene00004113 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00008369 Caenorhabditis elegans From_analysis: TreeFam
      WBGene00009408 Caenorhabditis elegans From_analysis: Panther
      WBGene00015936 Caenorhabditis elegans From_analysis: Panther
      WBGene00013704 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00236786 Caenorhabditis elegans From_analysis: Panther
      WBGene00304992 Caenorhabditis elegans From_analysis: WormBase-Compara
    Structured_description: Automated_description: Enriched in germ line and intestine based on RNA-seq and microarray studies. Is affected by several genes including daf-16; daf-2; and skn-1 based on microarray; tiling array; and RNA-seq studies. Is affected by thirteen chemicals including mianserin; procyanidin; and Alovudine based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domain: Snake toxin-like superfamily. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: Y106G6D.6
    Corresponding_CDS_history: Y106G6D.6:wp183
    Corresponding_transcript: Y106G6D.6.1
    Other_sequence: Oden_isotig12260
      Oden_isotig18293
      Oden_isotig12259
      Name_isotig03196
      Tcol_isotig14935
      Oden_isotig12261
      Acan_isotig12437
      Acan_isotig18769
    Associated_feature: WBsf220196
  Experimental_info: RNAi_result: WBRNAi00004497 Inferred_automatically: RNAi_primary
      WBRNAi00036515 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1011135
      Expr1036128
      Expr1158793
      Expr2006988
      Expr2025210
    Drives_construct: WBCnstr00029555
    Construct_product: WBCnstr00029555
    Microarray_results (18)
    Expression_cluster: WBPaper00030922:glycosylated_protein
      WBPaper00031040:TGF-beta_adult_upregulated
      WBPaper00032425:down_in_zfp-1
      WBPaper00033065:cyc-1(RNAi)_upregulated
      WBPaper00037950:hypodermis_L3-L4-larva_expressed
      WBPaper00038168:lin-15B(n744)_downregulated
      WBPaper00038438:E.faecalis_24hr_upregulated_TilingArray
      WBPaper00038438:Harposporium_24hr_upregulated_RNAseq
      WBPaper00042477:rsr-2(RNAi)_upregulated_TilingArray
      WBPaper00044578:reduced-humidity_downregulated_microarray
      WBPaper00044736:oscillating_dev_expression
      WBPaper00045774:clk-1_upregulated
      WBPaper00046509:htz-1(ok3099)_downregulated
      WBPaper00046509:lin-35(n745)_downregulated
      WBPaper00046741:Garlic-Extract_downregulated_mRNA
      WBPaper00048926:miaserin_upregulated_adult-day5
      WBPaper00048988:neuron_expressed
      WBPaper00049545:cco-1(RNAi)_downregulated
      WBPaper00049635:dop-1(vs100)_downregulated
      WBPaper00050370:dpy-21(e428)_L3_upregulated
      WBPaper00050801:DAF-12_dauer_regulome
      WBPaper00050801:DAF-16_dauer_regulome
      WBPaper00050801:DPY-21_dauer_regulome
      WBPaper00050903:mir-35-41(nDf50)_25C_upregulated
      WBPaper00050990:GABAergic-neuron_expressed
      WBPaper00050990:hypodermis_expressed
      WBPaper00050990:intestine_expressed
      WBPaper00050990:NMDA-neuron_expressed
      WBPaper00051039:germline_enriched
      WBPaper00053092:procyanidins_downregulated
      WBPaper00053184:sma-2(rax5)_upregulated
      WBPaper00053184:sma-4(rax3)_upregulated
      WBPaper00053302:alovudine_24h_regulated
      WBPaper00053302:stavudine_24h_regulated
      WBPaper00053308:SMG-2_associated_NMD(-)_upregulated_ClassI
      WBPaper00053321:nos-1(gv5)nos-2(RNAi)_downregulated_L1_SMARTseq
      WBPaper00053388:dauer_regulated_Cluster4
      WBPaper00053402:cco-1(RNAi)_upregulated
      WBPaper00053810:nuo-6(qm200)_upregulated
      WBPaper00055013:hmg-3(bar24)_upregulated
      WBPaper00055103:thoc-5(wy822)_downregulated
      WBPaper00055354:eat-2(ad1116)_downregulated
      WBPaper00055354:Psora-Allantoin_downregulated
      WBPaper00055354:Psora_downregulated
      WBPaper00055354:Rapamycin-Allantoin_downregulated
      WBPaper00055354:Rapamycin-Metformin_downregulated
      WBPaper00055354:Rapamycin-Psora-Allantoin_downregulated
      WBPaper00055354:Rapamycin-Psora_downregulated
      WBPaper00055354:Rapamycin-Rifampicin-Allantoin_downregulated
      WBPaper00055354:Rapamycin-Rifampicin-Psora_downregulated
      WBPaper00055354:Rapamycin-Rifampicin_downregulated
      WBPaper00055354:Rifampicin-Allantoin_downregulated
      WBPaper00055354:Rifampicin-Psora_downregulated
      WBPaper00055354:Rifampicin_downregulated
      WBPaper00055862:antimycin_damt-1(gk961032)_regulated
      WBPaper00055941:atfs-1(et15)_downregulated
      WBPaper00055941:nuo-6(qm200)_upregulated
      WBPaper00056169:rrf-3(pk1426)_downregulated_L2
      WBPaper00056169:rrf-3(pk1426)_upregulated_L4
      WBPaper00056443:sek-1(km4)_upregulated
      WBPaper00056997:nmad-1(ok3133)_upregulated_germline_25C
      WBPaper00057068:ints-4(RNAi)_upregulated
      WBPaper00057068:ints-4(RNAi)_upregulated_Cadmium
      WBPaper00058725:sftb-1(cer6)_downregulated
      WBPaper00058958:100mGy-irradiation-72h_downregulated
      WBPaper00058969:RIS_depleted
      WBPaper00059328:mrps-5(RNAi)_upregulated_mRNA
      WBPaper00059735:glucose_downregulated_lpin-1(RNAi)
      WBPaper00059895:wounding_upregulated
      WBPaper00059987:Wounding_upregulated
      WBPaper00060358:B.thuringiensis_pathogen_regulated_N2
      WBPaper00060811:L1_vs_adult_downregulated_neural
      WBPaper00060921:cat-2(e1112)_downregulated
      WBPaper00060921:tdc-1(n3419)_downregulated
      WBPaper00061405:S.aureus_downregulated_starvation
      WBPaper00061527:W01F3.2_1554-Y106G6D.8
      WBPaper00062118:neural-HSF-1_upregulated
      WBPaper00062193:skn-1(RNAi)_upregulated
      WBPaper00062325:muscle_depleted_coding-RNA
      WBPaper00062345:bortezomib_4h_downregulated_N2
      WBPaper00062354:H.zoospora_6h_regulated
      WBPaper00062446:nhr-8(hd117)_downregulated
      WBPaper00062520:qui-1(db104)_upregulated
      WBPaper00062587:lsl-1(ljm1)_upregulated
      WBPaper00062587:lsl-1(tm4769)_upregulated
      WBPaper00064088:Day-1-adult_vs_L4_upregulated_daf-16(mu86);glp-1(e2141)
      WBPaper00064088:Day-1-adult_vs_L4_upregulated_fem-3(q20)
      WBPaper00064088:Day-1-adult_vs_L4_upregulated_glp-1(e2141)
      WBPaper00064088:Day-3-adult_vs_L4_upregulated_daf-16(mu86);glp-1(e2141)
      WBPaper00064088:Day-3-adult_vs_L4_upregulated_fem-3(q20)
      WBPaper00064088:Day-3-adult_vs_L4_upregulated_glp-1(e2141)
      WBPaper00064158:xpo-1(RNAi)_upregulated
      WBPaper00064716:paraquat_downregulated
      WBPaper00064952:Day10_vs_Day1_upregulated_20C
      WBPaper00064952:Day10_vs_L4_upregulated_20C
      WBPaper00064952:Day10_vs_L4_upregulated_25C
      WBPaper00065096:25C_vs_20C_upregulated
      WBPaper00065096:Day10_vs_Day1_upregulated
      WBPaper00065096:npr-8(ok1439)_upregulated_Day1_20C
      WBPaper00065373:Cisplatin_downregulated_WT
      WBPaper00065373:sek-1(km4)_downregulated_Ref
      WBPaper00065734:unc-25(e156)_downregulated
      WBPaper00065835:Day11_vs_Day1_downregulated
      WBPaper00065835:mtH2S-AP39-D0-treatment_upregulated_Day11
      WBPaper00065841:2_0
      WBPaper00065975:P-body_vs_WholeAnimal_depleted
      WBPaper00065984:pals-17(syb3980)_upregulated
      WBPaper00065993:glp-1(e2141)_upregulated
      WBPaper00066062:xrep-4(lax137)_upregulated
      cgc4489_group_9
      WBPaper00025141:unc-4::GFP_Expressed_Genes
      WBPaper00026980:intestine_enriched
      WBPaper00029437:dcr-1_upregulated
      WBPaper00031532:Larva_Pan_Neuronal_Depleted
      WBPaper00032948:StarveUp2
      WBPaper00034661:AgNPs_upregulated
      WBPaper00035873:dpy-10_regulated
      WBPaper00035873:osm-8_regulated
      WBPaper00035873:osm-11_regulated
      WBPaper00036123:Atrazine_regulated
      WBPaper00036286:Pattern_D
      WBPaper00037695:WC_5-day
      WBPaper00038172:crh-1null_up_regulated
      WBPaper00038172:tax-6null_up_regulated
      WBPaper00040184:hcf-1nc_sir-2.1nc_daf-2up
      WBPaper00040603:tdp-1(lf)_up_vs_N2_FC_1.2
      WBPaper00040603:tdp-1(lf)_up_vs_N2_FC_1.5
      WBPaper00040821:Au-NP_regulated
      WBPaper00040823:alg-1(gk214)_upregulated
      WBPaper00041939:control_vs_UVC-EtBr-exposed_51h
      WBPaper00042258:DA1877_upregulated_YoungAdult
      WBPaper00047070:N2_starvation_upregulated
      WBPaper00047070:N2_UV_upregulated
      WBPaper00047070:xpa-1_UV_upregulated
      WBPaper00048989:eat-2(ad465)_downregulated_in-DMSO
      WBPaper00048989:eat-2(ad465)_rapamycin_upregulated
      WBPaper00053236:daf-16(mgDF50)_regulated_Fed
      WBPaper00053236:daf-16(mgDF50)_regulated_Starved
      WBPaper00053236:Starvation_regulated_N2
    Interaction (40)
  Map_info: Positive: Positive_clone: Y106G6D Inferred_automatically: From sequence, transcript, pseudogene data
    Interpolated_map_position: I 4.6578
  Method: Gene