WormBase Tree Display for Gene: WBGene00013668
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| WBGene00013668 | SMap | S_parent | Sequence | Y105E8A | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | slc-30A5 | |||||||
| Sequence_name | Y105E8A.3 | ||||||||
| Molecular_name | Y105E8A.3 | ||||||||
| Y105E8A.3.1 | |||||||||
| CE32233 | |||||||||
| Other_name | Y105E8A.d | Curator_confirmed | WBPerson1983 | ||||||
| Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
| CELE_Y105E8A.3 | Accession_evidence | NDB | BX284601 | ||||||
| Public_name | slc-30A5 | ||||||||
| DB_info | Database | AceView | gene | 1O959 | |||||
| WormQTL | gene | WBGene00013668 | |||||||
| WormFlux | gene | WBGene00013668 | |||||||
| NDB | locus_tag | CELE_Y105E8A.3 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00013668|UniProtKB=Q8WQB6 | |||||||
| family | PTHR45755 | ||||||||
| NCBI | gene | 173299 | |||||||
| RefSeq | protein | NM_170935.9 | |||||||
| TREEFAM | TREEFAM_ID | TF315217 | |||||||
| TrEMBL | UniProtAcc | Q8WQB6 | |||||||
| UniProt_GCRP | UniProtAcc | Q8WQB6 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:55 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 15 Jul 2019 14:29:07 | WBPerson1983 | Name_change | CGC_name | slc-30A5 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | slc | ||||||||
| Allele (175) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (19) | |||||||||
| Ortholog (38) | |||||||||
| Paralog | WBGene00000393 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||||
| WBGene00006590 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00010644 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00011821 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00012712 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00018948 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00019803 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00019841 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00044481 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Concise_description | Y105E8A.3 encodes a protein with similarity to members of the SLC30A family of zinc transporters; a deletion mutation, tm3941, that affects Y105E8A.2 and Y105E8A.3 has been reported to result in a lethal or sterile phenotype by the National Bioresource Project of Japan; the product of Y105E8A.3 localizes to the endoplasmic reticulum in body wall muscle; about 50% of Y105E8A.3 transcripts are RNA edited to change A to G resulting in a synonymous change to residue 319 from an G to a G. | Paper_evidence | WBPaper00038444 | |||||
| WBPaper00045975 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| WBPerson4025 | |||||||||
| Date_last_updated | 28 Dec 2014 00:00:00 | ||||||||
| Automated_description | Predicted to enable zinc ion transmembrane transporter activity. Predicted to be involved in intracellular zinc ion homeostasis and zinc ion import into Golgi lumen. Located in endoplasmic reticulum. Is an ortholog of human SLC30A5 (solute carrier family 30 member 5). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y105E8A.3 | |||||||
| Corresponding_CDS_history | Y105E8A.3:wp89 | ||||||||
| Corresponding_transcript | Y105E8A.3.1 | ||||||||
| Other_sequence (69) | |||||||||
| Associated_feature | WBsf643839 | ||||||||
| WBsf986144 | |||||||||
| WBsf1011236 | |||||||||
| WBsf218788 | |||||||||
| WBsf218789 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00055231 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00116518 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00055230 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr9559 | ||||||||
| Expr1011718 | |||||||||
| Expr1036100 | |||||||||
| Expr1158767 | |||||||||
| Expr2006975 | |||||||||
| Expr2025197 | |||||||||
| Construct_product | WBCnstr00014124 | ||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (116) | |||||||||
| Interaction | WBInteraction000160526 | ||||||||
| WBInteraction000203113 | |||||||||
| WBInteraction000255409 | |||||||||
| WBInteraction000326097 | |||||||||
| WBInteraction000359808 | |||||||||
| WBInteraction000465737 | |||||||||
| WBInteraction000470458 | |||||||||
| WBInteraction000554721 | |||||||||
| WBInteraction000583989 | |||||||||
| WBInteraction000584348 | |||||||||
| Map_info | Map | I | Position | 24.4563 | |||||
| Positive | Positive_clone | Y105E8A | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038444 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
