WormBase Tree Display for Gene: WBGene00013585
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| WBGene00013585 | SMap | S_parent | Sequence | Y80D3A | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | cyp-42A1 | |||||||
| Sequence_name | Y80D3A.5 | ||||||||
| Molecular_name | Y80D3A.5 | ||||||||
| Y80D3A.5.1 | |||||||||
| CE36516 | |||||||||
| Other_name | CELE_Y80D3A.5 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | cyp-42A1 | ||||||||
| DB_info | Database | AceView | gene | 5T391 | |||||
| WormQTL | gene | WBGene00013585 | |||||||
| WormFlux | gene | WBGene00013585 | |||||||
| NDB | locus_tag | CELE_Y80D3A.5 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00013585|UniProtKB=Q9U1R5 | |||||||
| family | PTHR24291 | ||||||||
| NCBI | gene | 180236 | |||||||
| RefSeq | protein | NM_075287.6 | |||||||
| TrEMBL | UniProtAcc | Q9U1R5 | |||||||
| UniProt_GCRP | UniProtAcc | Q9U1R5 | |||||||
| OMIM | gene | 608614 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:55 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 21 Sep 2004 09:38:16 | WBPerson1971 | Name_change | CGC_name | cyp-42A1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | cyp | ||||||||
| Allele (182) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00098316 | ||||||||
| 00098317 | |||||||||
| 00098318 | |||||||||
| 00098319 | |||||||||
| 00120400 | |||||||||
| 00120401 | |||||||||
| 00120402 | |||||||||
| 00120403 | |||||||||
| Ortholog (38) | |||||||||
| Paralog (11) | |||||||||
| Structured_description | Automated_description | Predicted to enable heme binding activity; iron ion binding activity; and oxidoreductase activity. Predicted to be located in membrane. Human ortholog(s) of this gene implicated in Bietti crystalline corneoretinal dystrophy. Is an ortholog of human CYP4V2 (cytochrome P450 family 4 subfamily V member 2). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0050664 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:23198) | ||||
| Molecular_info | Corresponding_CDS | Y80D3A.5 | |||||||
| Corresponding_CDS_history | Y80D3A.5:wp121 | ||||||||
| Corresponding_transcript | Y80D3A.5.1 | ||||||||
| Other_sequence (35) | |||||||||
| Associated_feature | WBsf718475 | ||||||||
| WBsf1003047 | |||||||||
| WBsf1003048 | |||||||||
| WBsf1003049 | |||||||||
| WBsf1021578 | |||||||||
| WBsf1021579 | |||||||||
| WBsf1021580 | |||||||||
| Experimental_info | RNAi_result (23) | ||||||||
| Expr_pattern | Expr1024015 | ||||||||
| Expr1036075 | |||||||||
| Expr1161957 | |||||||||
| Expr2010745 | |||||||||
| Expr2028981 | |||||||||
| Microarray_results (25) | |||||||||
| Expression_cluster (170) | |||||||||
| Interaction | WBInteraction000007851 | ||||||||
| WBInteraction000224556 | |||||||||
| WBInteraction000340741 | |||||||||
| WBInteraction000414102 | |||||||||
| WBInteraction000468655 | |||||||||
| Map_info | Map | V | Position | 18.4597 | Error | 0.00186 | |||
| Positive | Positive_clone | Y80D3A | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00028352 | ||||||||
| WBPaper00031529 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00064073 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
