WormBase Tree Display for Gene: WBGene00013585
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WBGene00013585 | SMap | S_parent | Sequence | Y80D3A | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | cyp-42A1 | |||||||
Sequence_name | Y80D3A.5 | ||||||||
Molecular_name | Y80D3A.5 | ||||||||
Y80D3A.5.1 | |||||||||
CE36516 | |||||||||
Other_name | CELE_Y80D3A.5 | Accession_evidence | NDB | BX284605 | |||||
Public_name | cyp-42A1 | ||||||||
DB_info | Database | AceView | gene | 5T391 | |||||
WormQTL | gene | WBGene00013585 | |||||||
WormFlux | gene | WBGene00013585 | |||||||
NDB | locus_tag | CELE_Y80D3A.5 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00013585|UniProtKB=Q9U1R5 | |||||||
family | PTHR24291 | ||||||||
NCBI | gene | 180236 | |||||||
RefSeq | protein | NM_075287.6 | |||||||
TrEMBL | UniProtAcc | Q9U1R5 | |||||||
UniProt_GCRP | UniProtAcc | Q9U1R5 | |||||||
OMIM | gene | 608614 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 26 May 2004 16:54:55 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
2 | 21 Sep 2004 09:38:16 | WBPerson1971 | Name_change | CGC_name | cyp-42A1 | ||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | cyp | ||||||||
Allele (182) | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00098316 | ||||||||
00098317 | |||||||||
00098318 | |||||||||
00098319 | |||||||||
00120400 | |||||||||
00120401 | |||||||||
00120402 | |||||||||
00120403 | |||||||||
Ortholog (38) | |||||||||
Paralog (11) | |||||||||
Structured_description | Automated_description | Predicted to enable heme binding activity; iron ion binding activity; and oxidoreductase activity. Predicted to be located in membrane. Human ortholog(s) of this gene implicated in Bietti crystalline corneoretinal dystrophy. Is an ortholog of human CYP4V2 (cytochrome P450 family 4 subfamily V member 2). | Paper_evidence | WBPaper00065943 | |||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Disease_info | Potential_model | DOID:0050664 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:23198) | ||||
Molecular_info | Corresponding_CDS | Y80D3A.5 | |||||||
Corresponding_CDS_history | Y80D3A.5:wp121 | ||||||||
Corresponding_transcript | Y80D3A.5.1 | ||||||||
Other_sequence | JI236077.1 | ||||||||
FC555100.1 | |||||||||
GE638975.1 | |||||||||
MH03470 | |||||||||
CBC14939_1 | |||||||||
Acan_isotig17692 | |||||||||
CRC01502_1 | |||||||||
BXC04886_1 | |||||||||
DA05898 | |||||||||
FC539255.1 | |||||||||
PT01393 | |||||||||
JI481815.1 | |||||||||
PTC00856_1 | |||||||||
FC554453.1 | |||||||||
BMC09275_1 | |||||||||
FC810349.1 | |||||||||
JI474701.1 | |||||||||
Dviv_isotig23935 | |||||||||
CRC08105_1 | |||||||||
EH362895.1 | |||||||||
GP01386 | |||||||||
PPC19772_1 | |||||||||
BXC02931_1 | |||||||||
Oden_isotig18948 | |||||||||
ACC32654_1 | |||||||||
JI221036.1 | |||||||||
FC540164.1 | |||||||||
MH04312 | |||||||||
MHC01647_1 | |||||||||
ACC41268_1 | |||||||||
JI463559.1 | |||||||||
CR07889 | |||||||||
BMC03033_1 | |||||||||
MA02742 | |||||||||
JI467468.1 | |||||||||
Associated_feature | WBsf718475 | ||||||||
WBsf1003047 | |||||||||
WBsf1003048 | |||||||||
WBsf1003049 | |||||||||
WBsf1021578 | |||||||||
WBsf1021579 | |||||||||
WBsf1021580 | |||||||||
Experimental_info | RNAi_result (23) | ||||||||
Expr_pattern | Expr1024015 | ||||||||
Expr1036075 | |||||||||
Expr1161957 | |||||||||
Expr2010745 | |||||||||
Expr2028981 | |||||||||
Microarray_results (25) | |||||||||
Expression_cluster (170) | |||||||||
Interaction | WBInteraction000007851 | ||||||||
WBInteraction000224556 | |||||||||
WBInteraction000340741 | |||||||||
WBInteraction000414102 | |||||||||
WBInteraction000468655 | |||||||||
Map_info | Map | V | Position | 18.4597 | Error | 0.00186 | |||
Positive | Positive_clone | Y80D3A | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Reference | WBPaper00028352 | ||||||||
WBPaper00031529 | |||||||||
WBPaper00038491 | |||||||||
WBPaper00055090 | |||||||||
WBPaper00064073 | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |