WormBase Tree Display for Sequence: Y80D3A
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| Y80D3A | DNA | Y80D3A | 102495 | ||
|---|---|---|---|---|---|
| SMap | S_child (11) | ||||
| Structure | From | Source | CHROMOSOME_V | ||
| Overlap_right | Y39B6A | 102377 | |||
| Overlap_left | Y17D7A | ||||
| Clone_left_end | Y39B6 | 102377 | |||
| Y80D3A | 1 | ||||
| Clone_right_end | Y17D7 | 107 | |||
| Y80D3A | 102495 | ||||
| DB_info | Database | EMBL | NDB_AC | AL132853 | |
| NDB_SV | AL132853.3 | ||||
| Secondary_accession | AL020988 | ||||
| DB_remark | [021111 dl] YAC found to be deleted. Added 5904 bp of new sequence to consensus (causes reprediction of Y80D3A.2) | ||||
| [121025] Sequence correction: SNP 0 bases @ 3069 | |||||
| Keyword | HTG | ||||
| EMBL_dump_info | EMBL_dump_method | worm_EMBL-dump | |||
| Origin | From_author | Harris BR | |||
| From_laboratory | HX | ||||
| Date_directory | 020919 | ||||
| Species | Caenorhabditis elegans | ||||
| Strain | WBStrain00000001 | ||||
| Visible | Clone | Y80D3A | |||
| Properties | Genomic_canonical | ||||
| Checksum | MD5 | d871af9ae7e67234c266293a8c8f172d | |||
| Status | Finished | 06 Sep 1999 00:00:00 | |||
| Submitted | 06 Sep 1999 00:00:00 | ||||
| Annotated | 04 Oct 1999 00:00:00 | ||||
| Map | Sequence-V | Ends | Left | 10824 | |
| Right | 10860 | ||||
| Interpolated_map_position | V | 18.4561 | |||
| Assembly_tags | Clone right end | 107 | 102 | Y17D7 | |
| Finished Left | 1 | 10 | Y80D3A | ||
| annotation | 10579 | 10580 | First select a Feature - [ ] Unsure [x] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [x] Single clone region [ ] Forced join [ ] Other Add a comment here - Part of inverted repeat. The other arm of the repeat supports this sequence. | ||
| 14372 | 14396 | First select a Feature - [ ] Unsure [x] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [x] Single clone region [ ] Forced join [ ] Other Add a comment here - | |||
| 35946 | 36018 | First select a Feature - [ ] Unsure [x] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [x] Single clone region [ ] Forced join [ ] Other Add a comment here - | |||
| 41684 | 41684 | First select a Feature - [x] Unsure [ ] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [ ] Single clone region [ ] Forced join [x] Other Add a comment here - one clone has a T deleted. This is a probed read (not from original shotgun) and is in an IR-2 repeat. | |||
| 54025 | 54025 | First select a Feature - [x] Unsure [ ] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [ ] Single clone region [ ] Forced join [x] Other Add a comment here - One clone has an A deleted | |||
| 52317 | 52317 | First select a Feature - [x] Unsure [ ] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [ ] Single clone region [ ] Forced join [x] Other Add a comment here - 2 clones have deleted A | |||
| 64293 | 64399 | First select a Feature - [ ] Unsure [x] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [x] Single clone region [ ] Forced join [ ] Other Add a comment here - | |||
| 83909 | 83957 | First select a Feature - [ ] Unsure [X] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [X] Single clone region [ ] Forced join [ ] Other Add a comment here | |||
| 83991 | 83991 | First select a Feature - [x] Unsure [ ] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [ ] Single clone region [ ] Forced join [ ] Other Add a comment here - Could be a G | |||
| Clone left end | 102377 | 102382 | Y39B6 | ||
| Finished Right | 102495 | 102481 | Y80D3A | ||
| Method | Genomic_canonical |
