WormBase Tree Display for Gene: WBGene00013550

WBGene00013550 SMap: S_parent: Sequence: Y75B8A
  Identity: Version: 2
    Name: CGC_name: gex-4 Person_evidence: WBPerson6609
            WBPerson1816
      Sequence_name: Y75B8A.14
      Molecular_name: Y75B8A.14
        Y75B8A.14.1
        CE23026
      Other_name: CELE_Y75B8A.14 Accession_evidence: NDB BX284603
      Public_name: gex-4
    DB_info: Database: AceView gene 3N306
        WormQTL gene WBGene00013550
        WormFlux gene WBGene00013550
        NDB locus_tag CELE_Y75B8A.14
        Panther gene CAEEL|WormBase=WBGene00013550|UniProtKB=Q9XW68
          family PTHR21231
        NCBI gene 176649
        RefSeq protein NM_067186.4
        TREEFAM TREEFAM_ID TF105810
        TrEMBL UniProtAcc Q9XW68
        UniProt_GCRP UniProtAcc Q9XW68
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:55 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 05 May 2023 12:43:53 WBPerson51134 Name_change: CGC_name: gex-4
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: gex
    Allele (54)
    RNASeq_FPKM (74)
    GO_annotation: 00103156
      00103157
      00103158
      00103159
      00103160
      00103161
    Contained_in_operon: CEOP3888
    Ortholog (37)
    Paralog: WBGene00001661 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00015029 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
    Structured_description: Automated_description: Predicted to enable GTPase activity. Is an ortholog of human GPN3 (GPN-loop GTPase 3). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: Y75B8A.14
    Corresponding_transcript: Y75B8A.14.1
    Other_sequence (55)
    Associated_feature: WBsf651529
      WBsf227642
  Experimental_info: RNAi_result: WBRNAi00037841 Inferred_automatically: RNAi_primary
      WBRNAi00002670 Inferred_automatically: RNAi_primary
      WBRNAi00058441 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1018137
      Expr1036052
      Expr1161860
      Expr2008409
      Expr2026650
    Drives_construct: WBCnstr00029599
    Construct_product: WBCnstr00029599
    Microarray_results (19)
    Expression_cluster: WBPaper00031040:TGF-beta_adult_downregulated
      WBPaper00032031:DConiospora_downregulated_cDNA_12h
      WBPaper00032031:DConiospora_downregulated_OligoArray_24h
      WBPaper00033065:cyc-1(RNAi)_upregulated
      WBPaper00033070:Elbe_upregulated
      WBPaper00037950:A-class-motor-neurons_L2-larva_expressed
      WBPaper00037950:AVE-neuron_embryo_enriched
      WBPaper00037950:intestine_L2-larva_expressed
      WBPaper00040209:B.thuringiensis_downregulated_MY15
      WBPaper00040412:germline-regulated_daf-16_target
      WBPaper00040560:hpl-2_embryo_downregulated
      WBPaper00044656:tatn-1(qd182)_downregulated
      WBPaper00044736:flat_dev_expression
      WBPaper00045521:Gender_Neutral
      WBPaper00048988:neuron_expressed
      WBPaper00049545:jmjd-3.1(+)_downregulated
      WBPaper00050163:chd-3(eh4);let-418(RNAi)_downregulated_24-cell-embryo
      WBPaper00050686:glp-1(e2141)_downregulated
      WBPaper00050859:downregulated_P-granule(-)GFP(+)_vs_control_day2-adult
      WBPaper00050990:body-muscle_expressed
      WBPaper00050990:hypodermis_expressed
      WBPaper00050990:intestine_expressed
      WBPaper00051039:germline_enriched
      WBPaper00051245:body-wall-muscle_cytoplasm_expressed
      WBPaper00051245:epidermis_cytoplasm_expressed
      WBPaper00051245:intestine_cytoplasm_expressed
      WBPaper00053184:sma-2(rax5)_downregulated
      WBPaper00053184:sma-4(rax3)_downregulated
      WBPaper00053308:SMG-2_associated_NMD(-)_unaltered_ClassII
      WBPaper00053321:PGCs_enriched_NuGen
      WBPaper00053599:oocyte_vs_mitosis_upregulated
      WBPaper00053810:daf-2(e1370)_downregulated
      WBPaper00053810:isp-1(qm150)_downregulated
      WBPaper00053810:nuo-6(qm200)_downregulated
      WBPaper00055354:Rifampicin-Allantoin_upregulated
      WBPaper00055648:germline_expressed
      WBPaper00056090:E.faecalis_downregulated_hpx-2(dg047)
      WBPaper00056443:sek-1(km4)_downregulated
      WBPaper00056471:aak-1(tm1944);aak-2(ok524)_downregulated
      WBPaper00057288:iff-1(RNAi)_downregulated_transcript
      WBPaper00058691:sin-3(tm1276)_downregulated
      WBPaper00058958:100mGy-irradiation-72h_downregulated
      WBPaper00059356:BAZ-2_SET-6_interacting
      WBPaper00060661:sensory-neuron_depleted
      WBPaper00061341:28C_24h_downregulated
      WBPaper00061341:28C_48h_downregulated
      WBPaper00061527:F53F4.11_10656-F44G4.1
      WBPaper00062193:skn-1(RNAi)_upregulated
      WBPaper00062554:MAGU-2_interacting
      WBPaper00064005:starvation_upregulated_N2_mRNA
      WBPaper00064071:NHR-49_interacting
      WBPaper00064088:Day-1-adult_vs_L4_downregulated_glp-1(e2141)
      WBPaper00064716:paraquat_upregulated
      WBPaper00065373:sek-1(km4)_downregulated_cisplatin
      WBPaper00065993:glp-1(e2141)_downregulated
      WBPaper00066146:germline-inx-14(RNAi)_downregulated_PA14
      WBPaper00025032:cluster_34
      WBPaper00025141:N2_Expressed_Genes
      WBPaper00025141:unc-4::GFP_Expressed_Genes
      WBPaper00026980:intestine_enriched
      WBPaper00035905:FBF-1_Associated
      WBPaper00036123:Atrazine_regulated
      WBPaper00036123:Cadmium_regulated
      WBPaper00036286:Pattern_E
      WBPaper00038231:Cry5B_1.5-fold_downregulated
      WBPaper00041002:HF_3d_0.2mM_Down
      WBPaper00041002:HF_3d_2.0mM_Down
      WBPaper00041606:CE_S.marcescens_regulated
      WBPaper00041606:CE_X.nematophila_regulated
      WBPaper00045263:0.1mM-paraquat_upregulated
      WBPaper00045263:isp-1(qm150)_downregulated
      WBPaper00045263:nuo-6(qm200)_downregulated
      WBPaper00047070:DAF-16-dependent_UV_response
      WBPaper00048989:N2_allantoin_upregulated
      WBPaper00053236:Starvation_regulated_N2
      [cgc5767]:expression_class_E
      [cgc5767]:expression_class_E_pi(101_min)
      [cgc5767]:expression_class_M
      [cgc5767]:expression_class_MD
      [cgc5767]:expression_class_MDE
      [cgc5767]:expression_class_MD_pd(66_min)
      [cgc5767]:expression_class_ME
      [cgc6390]:oogenesis-enriched
    Interaction (35)
  Map_info: Map: III Position: 16.1275
    Positive: Positive_clone: Y75B8A Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00038491
    WBPaper00041771
    WBPaper00055090
    WBPaper00061547
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene