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WormBase Tree Display for Gene: WBGene00013435

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Name Class

WBGene00013435SMapS_parentSequenceY66D12A
IdentityVersion2
NameCGC_namepsme-3Person_evidenceWBPerson18908
Sequence_nameY66D12A.9
Molecular_nameY66D12A.9a
Y66D12A.9a.1
CE28807
Y66D12A.9b
CE54531
Y66D12A.9b.1
Other_nameCELE_Y66D12A.9Accession_evidenceNDBBX284603
Public_namepsme-3
DB_infoDatabaseAceViewgene3M661
WormQTLgeneWBGene00013435
WormFluxgeneWBGene00013435
NDBlocus_tagCELE_Y66D12A.9
PanthergeneCAEEL|WormBase=WBGene00013435|UniProtKB=Q95PZ7
familyPTHR10660
NCBIgene176588
RefSeqproteinNM_001420556.1
NM_067092.8
TrEMBLUniProtAccA0A8S4SQL6
Q95PZ7
UniProt_GCRPUniProtAccQ95PZ7
SpeciesCaenorhabditis elegans
HistoryVersion_change126 May 2004 16:54:55WBPerson1971EventImportedInitial conversion from CDS class of WS125
210 Nov 2021 16:42:28WBPerson1983Name_changeCGC_namepsme-3
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classpsme
Allele (162)
RNASeq_FPKM (74)
GO_annotation00088036
00088037
00088038
00088039
00088040
00088041
00120282
Contained_in_operonCEOP3723
Ortholog (34)
Structured_descriptionAutomated_descriptionPredicted to enable endopeptidase activator activity. Predicted to be involved in regulation of G1/S transition of mitotic cell cycle and regulation of proteasomal protein catabolic process. Predicted to be located in cytoplasm and nucleoplasm. Predicted to be part of proteasome activator complex. Is an ortholog of human PSME3 (proteasome activator subunit 3).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSY66D12A.9a
Y66D12A.9b
Corresponding_transcriptY66D12A.9a.1
Y66D12A.9b.1
Other_sequence (42)
Associated_featureWBsf994429
WBsf994430
WBsf1016032
WBsf1016033
WBsf225838
Experimental_infoRNAi_resultWBRNAi00057955Inferred_automaticallyRNAi_primary
Expr_patternExpr1017382
Expr1036002
Expr1161383
Expr2008189
Expr2026429
Microarray_results (17)
Expression_clusterWBPaper00028451:Low_abundance_spermatogenesis_enriched
WBPaper00031040:TGF-beta_adult_downregulated
WBPaper00032528:L3_enriched
WBPaper00037950:all-neurons_L1-larva_expressed
WBPaper00037950:all-neurons_L2-larva_expressed
WBPaper00037950:AVA-neuron_L1-larva_expressed
WBPaper00037950:AVE-neuron_L1-larva_expressed
WBPaper00037950:BAG-neuron_blastula-embryo_expressed
WBPaper00037950:bodywall-muscle_L2-larva_expressed
WBPaper00037950:bodywall-muscle_larva_enriched
WBPaper00037950:bodywall-muscle_larva_SelectivelyEnriched
WBPaper00037950:excretory-cell_L2-larva_expressed
WBPaper00037950:GABAergic-motor-neurons_L2-larva_expressed
WBPaper00037950:intestine_L1-larva_expressed
WBPaper00037950:intestine_L2-larva_expressed
WBPaper00037950:intestine_larva_enriched
WBPaper00037950:pharyngeal-muscle_L1-larva_expressed
WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed
WBPaper00040560:hpl-2_embryo_downregulated
WBPaper00044037:eat-2_downregulated
WBPaper00044656:tatn-1(qd182)_downregulated
WBPaper00044736:flat_dev_expression
WBPaper00045521:Gender_Neutral
WBPaper00045729:gld-2(RNAi)_downregulated
WBPaper00045774:clk-1_downregulated
WBPaper00046497:B.thuringiensis_0.1mix_downregulated_6h
WBPaper00046497:B.thuringiensis_0.5mix_downregulated_6h
WBPaper00046499:AMPK_regulated
WBPaper00047132:skn-1(RNAi)_downregulated_glp-1(ts)-dependent
WBPaper00048923:Aging_regulated
WBPaper00048988:neuron_expressed
WBPaper00049325:CB4856_vs_N2_DEG
WBPaper00049498:npr-1(ur89)_regulated_6
WBPaper00049545:jmjd-3.1(+)_downregulated
WBPaper00049545:sur-5p-jmjd-1.2(+)_downregulated
WBPaper00049942:hsf-1(RNAi)_downregulated
WBPaper00050080:rbr-2(tm3141)_downregulated
WBPaper00050488:20C_vs_25C_regulated_mir-34(gk437)_adult
WBPaper00050488:20C_vs_25C_regulated_mir-34(OverExpression)_adult
WBPaper00050488:20C_vs_25C_regulated_N2_adult
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050686:glp-1(e2141)_downregulated
WBPaper00050726:OsmoticStress_regulated_Food
WBPaper00050726:starvation_regulated_LowSalt
WBPaper00050801:DAF-16_dauer_regulome
WBPaper00050801:DPY-21_dauer_regulome
WBPaper00050990:GABAergic-neuron_expressed
WBPaper00050990:hypodermis_expressed
WBPaper00050990:intestine_expressed
WBPaper00051039:germline_enriched
WBPaper00051245:body-wall-muscle_nucleus_expressed
WBPaper00051245:epidermis_nucleus_expressed
WBPaper00051245:intestine_nucleus_expressed
WBPaper00051245:nucleus_specific
WBPaper00051461:pig-1(gm344)_upregulated
WBPaper00053184:sma-2(rax5)_downregulated
WBPaper00053184:sma-4(rax3)_downregulated
WBPaper00053295:lin-22(ot269)_downregulated
WBPaper00053321:embryo-to-L1_downregulated_nos-1(gv5)nos-2(RNAi)_SMARTseq
WBPaper00053321:nos-1(gv5)nos-2(RNAi)_upregulated_embryo_SMARTseq
WBPaper00053388:dauer_regulated_Cluster6
WBPaper00053599:oocyte_vs_mitosis_upregulated
WBPaper00053713:Pheromone-induced_postdauer_vs_control_downregulated
WBPaper00053810:daf-2(e1370)_downregulated
WBPaper00053810:isp-1(qm150)_downregulated
WBPaper00053810:nuo-6(qm200)_downregulated
WBPaper00055060:flr-1(RNAi)_downregulated
WBPaper00055354:eat-2(ad1116)_downregulated
WBPaper00055354:Rapamycin-Psora-Allantoin_downregulated
WBPaper00055354:Rifampicin-Psora_downregulated
WBPaper00055482:pmt-2(RNAi)_downregulated
WBPaper00055648:germline_expressed
WBPaper00056034:pals-22(jy3)_downregulated
WBPaper00056034:pals-25(jy9)_downregulated
WBPaper00056090:E.faecalis_downregulated_hpx-2(dg047)
WBPaper00056090:E.faecalis_downregulated_N2
WBPaper00056293:rpl-5(0)-rpl-33(0)_upregulated
WBPaper00056471:aak-1(tm1944);aak-2(ok524)_downregulated
WBPaper00056471:S.aureus-4h_downregulated_N2
WBPaper00057041:unc-70(cas983)_upregulated
WBPaper00057288:Cold_downregulated_protein
WBPaper00057288:iff-1(RNAi)_upregulated_transcript
WBPaper00058725:sftb-1(cer6)_upregulated
WBPaper00059328:mrps-5(RNAi)_downregulated_mRNA
WBPaper00059334:SACY-1_interacting
WBPaper00059356:set-6(ok2195)_baz-2(tm0235)_regulated
WBPaper00060014:set-2(tm1630)_upregulated
WBPaper00060084:cco-1(RNAi)_downregulated_N2
WBPaper00060100:SiNP_downregulated_mRNA
WBPaper00060811:L1_vs_adult_downregulated_neural
WBPaper00061203:spr-1(ok2144)_downregulated
WBPaper00061340:M_cell
WBPaper00061341:28C_24h_downregulated
WBPaper00061527:mtr-4_1623-W03F9.10_103
WBPaper00062159:hda-2(ok1479)_downregulated
WBPaper00062193:skn-1(RNAi)_upregulated
WBPaper00062354:H.zoospora_6h_regulated
WBPaper00062498:PPM-1.D_interacting
WBPaper00062520:qui-1(db104)_downregulated
WBPaper00064071:NHR-49_interacting
WBPaper00064088:Day-1-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
WBPaper00064088:Day-1-adult_vs_L4_downregulated_fem-3(q20)
WBPaper00064088:Day-1-adult_vs_L4_downregulated_glp-1(e2141)
WBPaper00064088:Day-3-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
WBPaper00064088:Day-3-adult_vs_L4_downregulated_glp-1(e2141)
WBPaper00064716:paraquat_upregulated
WBPaper00065120:body-muscle-transcriptome
WBPaper00065373:Cisplatin_downregulated_WT
WBPaper00065945:epidermis-rpoa-2(-)_upregulated_protein
WBPaper00065945:global-rpoa-2(-)_upregulated_transcript
WBPaper00065993:glp-1(e2141)_downregulated
WBPaper00066146:germline-inx-14(RNAi)_downregulated_PA14
WBPaper00025032:cluster_51
WBPaper00025141:N2_Expressed_Genes
WBPaper00025141:unc-4::GFP_Expressed_Genes
WBPaper00032165:differentially_expressed_with_age_medoid_7
WBPaper00032948:FedUp
WBPaper00035905:FBF-1_Associated
WBPaper00036286:Pattern_F
WBPaper00038060:SUMO-1_upregulated
WBPaper00038231:Cry5B_1.5-fold_downregulated
WBPaper00038231:Cry5B_2-fold_downregulated
WBPaper00040184:hcf-1down_sir-2.1down_daf-2down
WBPaper00040210:Chlorpyrifos_Diazinon_24C_regulated
WBPaper00040858:eQTL_age_regulated_developing
WBPaper00040858:eQTL_regulated_developing
WBPaper00040858:eQTL_regulated_juvenile
WBPaper00041002:HF_3d_2.0mM_Down
WBPaper00041606:CE_S.marcescens_regulated
WBPaper00041606:CE_X.nematophila_regulated
WBPaper00041939:control_vs_EtBr-exposed_48h
WBPaper00041939:control_vs_UVC-EtBr-exposed_51h
WBPaper00041939:EtBr-exposed_vs_UVC-exposed_48h
WBPaper00041939:UVC-EtBr-exposed_vs_EtBr-exposed_51h
WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_48h
WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_51h
WBPaper00045263:isp-1(qm150)_downregulated
WBPaper00045263:nuo-6(qm200)_downregulated
WBPaper00047070:DAF-16-dependent_UV_response
WBPaper00047070:N2_starvation_downregulated
WBPaper00047070:N2_UV_upregulated
WBPaper00047070:xpa-1_UV_upregulated
WBPaper00048989:eat-2(ad465)_rapamycin_upregulated
WBPaper00053236:daf-16(mgDF50)_regulated_Starved
WBPaper00053236:Starvation_regulated_GR1307
WBPaper00053236:Starvation_regulated_N2
Interaction (52)
Map_infoMapIIIPosition10.9733
PositivePositive_cloneY66D12AInferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00027363
WBPaper00038491
WBPaper00055090
WBPaper00061547
WBPaper00065312
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene