WormBase Tree Display for Gene: WBGene00013216
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| WBGene00013216 | SMap | S_parent | Sequence | Y54G11A | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | Sequence_name | Y54G11A.7 | |||||||
| Molecular_name | Y54G11A.7 | ||||||||
| Y54G11A.7.1 | |||||||||
| CE32990 | |||||||||
| Other_name | CELE_Y54G11A.7 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | Y54G11A.7 | ||||||||
| DB_info | Database | AceView | gene | 2O589 | |||||
| WormQTL | gene | WBGene00013216 | |||||||
| WormFlux | gene | WBGene00013216 | |||||||
| NDB | locus_tag | CELE_Y54G11A.7 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00013216|UniProtKB=Q9XW01 | |||||||
| family | PTHR16263 | ||||||||
| NCBI | gene | 175084 | |||||||
| RefSeq | protein | NM_064575.7 | |||||||
| TREEFAM | TREEFAM_ID | TF313343 | |||||||
| TrEMBL | UniProtAcc | Q9XW01 | |||||||
| UniProt_GCRP | UniProtAcc | Q9XW01 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:54 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Allele (55) | |||||||||
| Strain | WBStrain00003667 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog (36) | |||||||||
| Paralog | WBGene00013215 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Inparanoid_8 | |||||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| Structured_description | Automated_description | Enriched in several structures, including body wall musculature; coelomocyte; muscle cell; neurons; and somatic nervous system based on Chronogram; microarray; tiling array; and RNA-seq studies. Is affected by several genes including daf-16; daf-2; and skn-1 based on microarray; proteomic; and RNA-seq studies. Is affected by eighteen chemicals including Heme; rotenone; and Zidovudine based on microarray; RNA-seq; and proteomic studies. Is predicted to encode a protein with the following domains: Tetratricopeptide repeat protein 38 and Tetratricopeptide-like helical domain superfamily. Is an ortholog of human TTC38 (tetratricopeptide repeat domain 38). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y54G11A.7 | |||||||
| Corresponding_CDS_history | Y54G11A.7:wp92 | ||||||||
| Corresponding_transcript | Y54G11A.7.1 | ||||||||
| Other_sequence | Oden_isotig07915 | ||||||||
| JI172803.1 | |||||||||
| Acan_isotig01674 | |||||||||
| Oden_isotig15768 | |||||||||
| CJC18129_1 | |||||||||
| Oden_isotig07914 | |||||||||
| Acan_isotig01676 | |||||||||
| Acan_isotig01675 | |||||||||
| Associated_feature | WBsf644841 | ||||||||
| WBsf990680 | |||||||||
| WBsf990681 | |||||||||
| WBsf1013816 | |||||||||
| WBsf1013817 | |||||||||
| WBsf1013818 | |||||||||
| WBsf222442 | |||||||||
| WBsf222443 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00026853 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00037487 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00026854 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00020989 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00027532 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Chronogram640 | ||||||||
| Chronogram693 | |||||||||
| Expr7051 | |||||||||
| Expr7052 | |||||||||
| Expr1010250 | |||||||||
| Expr1035878 | |||||||||
| Expr1160868 | |||||||||
| Expr2007929 | |||||||||
| Expr2026171 | |||||||||
| Drives_construct | WBCnstr00004064 | ||||||||
| WBCnstr00004103 | |||||||||
| WBCnstr00029726 | |||||||||
| Construct_product | WBCnstr00029726 | ||||||||
| Microarray_results (17) | |||||||||
| Expression_cluster (188) | |||||||||
| Interaction (16) | |||||||||
| Map_info | Positive | Positive_clone | Y54G11A | Inferred_automatically | From sequence, transcript, pseudogene data | ||||
| Interpolated_map_position | II | 22.9013 | |||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00055090 | |||||||||
| Method | Gene |
