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WormBase Tree Display for Gene: WBGene00013215

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Name Class

WBGene00013215SMapS_parentSequenceY54G11A
IdentityVersion1
NameSequence_nameY54G11A.4
Molecular_nameY54G11A.4
Y54G11A.4.1
CE43439
Other_nameCELE_Y54G11A.4Accession_evidenceNDBBX284602
Public_nameY54G11A.4
DB_infoDatabaseAceViewgene2O583
WormQTLgeneWBGene00013215
WormFluxgeneWBGene00013215
NDBlocus_tagCELE_Y54G11A.4
PanthergeneCAEEL|WormBase=WBGene00013215|UniProtKB=Q9XW02
familyPTHR16263
NCBIgene190295
RefSeqproteinNM_064574.4
TREEFAMTREEFAM_IDTF313343
TrEMBLUniProtAccQ9XW02
UniProt_GCRPUniProtAccQ9XW02
SpeciesCaenorhabditis elegans
HistoryVersion_change126 May 2004 16:54:54WBPerson1971EventImportedInitial conversion from CDS class of WS125
StatusLive
Gene_infoBiotypeSO:0001217
Allele (60)
RNASeq_FPKM (74)
Ortholog (36)
ParalogWBGene00013216Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
Panther
WormBase-Compara
Structured_descriptionAutomated_descriptionEnriched in intestine; neurons; and somatic gonad precursor based on microarray; tiling array; and RNA-seq studies. Is affected by several genes including daf-2; skn-1; and glp-1 based on microarray; tiling array; and RNA-seq studies. Is affected by thirteen chemicals including rotenone; Psoralens; and allantoin based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: Tetratricopeptide-like helical domain superfamily and Tetratricopeptide repeat protein 38. Is an ortholog of human TTC38 (tetratricopeptide repeat domain 38).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS290 version of WormBase
Date_last_updated11 Sep 2023 00:00:00
Molecular_infoCorresponding_CDSY54G11A.4
Corresponding_CDS_historyY54G11A.4:wp198
Corresponding_transcriptY54G11A.4.1
Other_sequenceBMC04875_1
Associated_featureWBsf658399
WBsf717045
WBsf990678
WBsf990679
Experimental_infoRNAi_resultWBRNAi00020986Inferred_automaticallyRNAi_primary
WBRNAi00057429Inferred_automaticallyRNAi_primary
Expr_patternExpr1014687
Expr1160865
Expr2007928
Expr2026170
Microarray_results (13)
Expression_cluster (168)
InteractionWBInteraction000177174
WBInteraction000413720
WBInteraction000578357
Map_infoPositivePositive_cloneY54G11AInferred_automaticallyFrom sequence, transcript, pseudogene data
Interpolated_map_positionII22.9011
ReferenceWBPaper00038491
WBPaper00055090
MethodGene