WormBase Tree Display for Gene: WBGene00013215

WBGene00013215 SMap: S_parent: Sequence: Y54G11A
  Identity: Version: 1
    Name: Sequence_name: Y54G11A.4
      Molecular_name: Y54G11A.4
        Y54G11A.4.1
        CE43439
      Other_name: CELE_Y54G11A.4 Accession_evidence: NDB BX284602
      Public_name: Y54G11A.4
    DB_info: Database: AceView gene 2O583
        WormQTL gene WBGene00013215
        WormFlux gene WBGene00013215
        NDB locus_tag CELE_Y54G11A.4
        Panther gene CAEEL|WormBase=WBGene00013215|UniProtKB=Q9XW02
          family PTHR16263
        NCBI gene 190295
        RefSeq protein NM_064574.4
        TREEFAM TREEFAM_ID TF313343
        TrEMBL UniProtAcc Q9XW02
        UniProt_GCRP UniProtAcc Q9XW02
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:54 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
    Status: Live
  Gene_info: Biotype: SO:0001217
    Allele (60)
    RNASeq_FPKM (74)
    Ortholog: WBGene00039725 Caenorhabditis briggsae From_analysis: OrthoMCL
            WormBase-Compara
      WBGene00134519 Caenorhabditis japonica From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00162731 Caenorhabditis brenneri From_analysis: TreeFam
            WormBase-Compara
      WBGene00194372 Caenorhabditis brenneri From_analysis: TreeFam
            WormBase-Compara
      WBGene00057580 Caenorhabditis remanei From_analysis: TreeFam
            WormBase-Compara
      WBGene00227090 Brugia malayi From_analysis: WormBase-Compara
      CBOVI.g6572 Caenorhabditis bovis From_analysis: WormBase-Compara
      CBOVI.g6576 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g10833 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g5131 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g1498 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g17288 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g27287 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g8988 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g3102 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g18435 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP39.g30099 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g5607 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00133.g5263 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cnig_chr_II.g6717 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp5_scaffold_00020.g1217 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_06851 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_005804 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g08753 Oscheius tipulae From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g08754 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g16944 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_20073000 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrII_pilon.g6511 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00213586 Caenorhabditis japonica From_analysis: WormBase-Compara
      WBGene00246993 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00273583 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00266995 Strongyloides ratti From_analysis: WormBase-Compara
      ZFIN:ZDB-GENE-050522-318 Danio rerio From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      HGNC:26082 Homo sapiens From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      MGI:2146198 Mus musculus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      RGD:1306041 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
    Paralog: WBGene00013216 Caenorhabditis elegans From_analysis: TreeFam
            Inparanoid_8
            Panther
            WormBase-Compara
    Structured_description: Automated_description: Enriched in intestine; neurons; and somatic gonad precursor based on microarray; tiling array; and RNA-seq studies. Is affected by several genes including daf-2; skn-1; and glp-1 based on microarray; tiling array; and RNA-seq studies. Is affected by thirteen chemicals including rotenone; Psoralens; and allantoin based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: Tetratricopeptide repeat protein 38 and Tetratricopeptide-like helical domain superfamily. Is an ortholog of human TTC38 (tetratricopeptide repeat domain 38). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: Y54G11A.4
    Corresponding_CDS_history: Y54G11A.4:wp198
    Corresponding_transcript: Y54G11A.4.1
    Other_sequence: BMC04875_1
    Associated_feature: WBsf658399
      WBsf717045
      WBsf990678
      WBsf990679
  Experimental_info: RNAi_result: WBRNAi00020986 Inferred_automatically: RNAi_primary
      WBRNAi00057429 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1014687
      Expr1160865
      Expr2007928
      Expr2026170
    Microarray_results (13)
    Expression_cluster (179)
    Interaction: WBInteraction000177174
      WBInteraction000413720
      WBInteraction000578357
  Map_info: Positive: Positive_clone: Y54G11A Inferred_automatically: From sequence, transcript, pseudogene data
    Interpolated_map_position: II 22.9011
  Reference: WBPaper00038491
    WBPaper00055090
  Method: Gene