WormBase Tree Display for Gene: WBGene00013144
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WBGene00013144 | SMap | S_parent | Sequence | Y53C12B | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | pno-1 | Person_evidence | WBPerson260 | |||||
Sequence_name | Y53C12B.2 | ||||||||
Molecular_name | Y53C12B.2 | ||||||||
Y53C12B.2.1 | |||||||||
CE14896 | |||||||||
Other_name | CELE_Y53C12B.2 | Accession_evidence | NDB | BX284602 | |||||
Public_name | pno-1 | ||||||||
DB_info | Database | AceView | gene | 2K30 | |||||
WormQTL | gene | WBGene00013144 | |||||||
WormFlux | gene | WBGene00013144 | |||||||
NDB | locus_tag | CELE_Y53C12B.2 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00013144|UniProtKB=O18216 | |||||||
family | PTHR12826 | ||||||||
NCBI | gene | 174534 | |||||||
RefSeq | protein | NM_063698.5 | |||||||
SwissProt | UniProtAcc | O18216 | |||||||
TREEFAM | TREEFAM_ID | TF300114 | |||||||
UniProt_GCRP | UniProtAcc | O18216 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 26 May 2004 16:54:54 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
2 | 13 Nov 2017 15:54:28 | WBPerson1983 | Name_change | CGC_name | pno-1 | ||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | pno | ||||||||
Allele (61) | |||||||||
Strain | WBStrain00051193 | ||||||||
WBStrain00051907 | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00031718 | ||||||||
00031719 | |||||||||
00031720 | |||||||||
00031721 | |||||||||
00031722 | |||||||||
00031723 | |||||||||
00031724 | |||||||||
00120072 | |||||||||
00120073 | |||||||||
Contained_in_operon | CEOP2452 | ||||||||
Ortholog (35) | |||||||||
Structured_description | Automated_description | Predicted to enable RNA binding activity. Predicted to be involved in ribosomal small subunit biogenesis. Predicted to be located in nucleolus. Predicted to be part of small-subunit processome. Is an ortholog of human PNO1 (partner of NOB1 homolog). | Paper_evidence | WBPaper00065943 | |||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | Y53C12B.2 | |||||||
Corresponding_transcript | Y53C12B.2.1 | ||||||||
Other_sequence | TM00921 | ||||||||
TMC00430_1 | |||||||||
CSC00221_1 | |||||||||
BMC00233_1 | |||||||||
MH00287 | |||||||||
JI464425.1 | |||||||||
JI478484.1 | |||||||||
HC07161 | |||||||||
OVC00094_1 | |||||||||
Dviv_isotig17246 | |||||||||
CBC00643_1 | |||||||||
ES739809.1 | |||||||||
FD515986.1 | |||||||||
PTC01963_1 | |||||||||
BG467806.1 | |||||||||
OVC00216_1 | |||||||||
AW308625.1 | |||||||||
FD515083.1 | |||||||||
Acan_isotig03153 | |||||||||
FE911324.1 | |||||||||
HC07895 | |||||||||
BG310523.1 | |||||||||
FE916836.1 | |||||||||
AW208329.1 | |||||||||
ASC00640_1 | |||||||||
FE906188.1 | |||||||||
CR01557 | |||||||||
Tcir_isotig09796 | |||||||||
CGC00391_1 | |||||||||
BF599278.1 | |||||||||
BE132549.1 | |||||||||
HC02201 | |||||||||
Oden_isotig20491 | |||||||||
JO471995.1 | |||||||||
AM743566.1 | |||||||||
RS07813 | |||||||||
BE491778.1 | |||||||||
Hbac_isotig05531 | |||||||||
PT02460 | |||||||||
PVC03558_1 | |||||||||
JI470098.1 | |||||||||
BE132496.1 | |||||||||
JI176976.1 | |||||||||
JI481405.1 | |||||||||
CD374568.1 | |||||||||
CRC02274_1 | |||||||||
BE132471.1 | |||||||||
FG583613.1 | |||||||||
CGC00250_1 | |||||||||
Hbac_isotig07170 | |||||||||
NAC00531_1 | |||||||||
ES743309.1 | |||||||||
CJC01478_1 | |||||||||
Tcol_isotig13845 | |||||||||
HCC09228_1 | |||||||||
MHC00988_1 | |||||||||
FE914649.1 | |||||||||
FG581696.1 | |||||||||
WBC00484_1 | |||||||||
CBC00186_1 | |||||||||
FE916948.1 | |||||||||
Dviv_isotig17247 | |||||||||
GO249521.1 | |||||||||
HC02271 | |||||||||
HCC04716_1 | |||||||||
HBC16890_1 | |||||||||
PPC05575_1 | |||||||||
FD514824.1 | |||||||||
Tcir_isotig10094 | |||||||||
PPC05940_1 | |||||||||
TM01681 | |||||||||
BE202317.1 | |||||||||
Acan_isotig03154 | |||||||||
Name_isotig04290 | |||||||||
RSC03151_1 | |||||||||
BM00932 | |||||||||
AS02690 | |||||||||
JI175110.1 | |||||||||
EL890146.1 | |||||||||
TDC03238_1 | |||||||||
Associated_feature | WBsf665965 | ||||||||
WBsf665966 | |||||||||
WBsf665967 | |||||||||
WBsf989133 | |||||||||
WBsf1012894 | |||||||||
WBsf223699 | |||||||||
WBsf223700 | |||||||||
WBsf223701 | |||||||||
Experimental_info | RNAi_result | WBRNAi00076812 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00057256 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00075896 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00009378 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00037405 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00106944 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr1027618 | ||||||||
Expr1035835 | |||||||||
Expr1160693 | |||||||||
Expr2007837 | |||||||||
Expr2026077 | |||||||||
Drives_construct | WBCnstr00029745 | ||||||||
Construct_product | WBCnstr00029745 | ||||||||
Microarray_results | SMD_Y53C12B.2 | ||||||||
185203_s_at | |||||||||
Aff_Y53C12B.2 | |||||||||
GPL13394_WBGene00013144 | |||||||||
GPL13914_Y53C12B.2 | |||||||||
GPL14144_Y53C12B.2_620-679_0.946_2_B | |||||||||
GPL14144_Y53C12B.2_698-757_0.932_5_C | |||||||||
GPL14144_Y53C12B.2_793-852_0.952_1_A | |||||||||
GPL19516_CGZ0048849 | |||||||||
GPL21109_Y53C12B.2 | |||||||||
GPL3518_CE14896 | |||||||||
GPL8304_CE_WBGene00013144_A | |||||||||
GPL8673_Y53C12B_2P00213 | |||||||||
GPL8673_Y53C12B_2P00314 | |||||||||
GPL8673_Y53C12B_2P00549 | |||||||||
Expression_cluster (105) | |||||||||
Interaction (194) | |||||||||
Map_info | Map | II | Position | 1.70646 | |||||
Positive | Positive_clone | Y53C12B | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Reference | WBPaper00038491 | ||||||||
WBPaper00049828 | |||||||||
WBPaper00055090 | |||||||||
WBPaper00058216 | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |