WormBase Tree Display for Gene: WBGene00013144
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| WBGene00013144 | SMap | S_parent | Sequence | Y53C12B | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | pno-1 | Person_evidence | WBPerson260 | |||||
| Sequence_name | Y53C12B.2 | ||||||||
| Molecular_name | Y53C12B.2 | ||||||||
| Y53C12B.2.1 | |||||||||
| CE14896 | |||||||||
| Other_name | CELE_Y53C12B.2 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | pno-1 | ||||||||
| DB_info | Database | AceView | gene | 2K30 | |||||
| WormQTL | gene | WBGene00013144 | |||||||
| WormFlux | gene | WBGene00013144 | |||||||
| NDB | locus_tag | CELE_Y53C12B.2 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00013144|UniProtKB=O18216 | |||||||
| family | PTHR12826 | ||||||||
| NCBI | gene | 174534 | |||||||
| RefSeq | protein | NM_063698.5 | |||||||
| SwissProt | UniProtAcc | O18216 | |||||||
| TREEFAM | TREEFAM_ID | TF300114 | |||||||
| UniProt_GCRP | UniProtAcc | O18216 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:54 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 13 Nov 2017 15:54:28 | WBPerson1983 | Name_change | CGC_name | pno-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | pno | ||||||||
| Allele (61) | |||||||||
| Strain | WBStrain00051193 | ||||||||
| WBStrain00051907 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00031718 | ||||||||
| 00031719 | |||||||||
| 00031720 | |||||||||
| 00031721 | |||||||||
| 00031722 | |||||||||
| 00031723 | |||||||||
| 00031724 | |||||||||
| 00120072 | |||||||||
| 00120073 | |||||||||
| Contained_in_operon | CEOP2452 | ||||||||
| Ortholog (35) | |||||||||
| Structured_description | Automated_description | Predicted to enable RNA binding activity. Predicted to be involved in ribosomal small subunit biogenesis. Predicted to be located in nucleolus. Predicted to be part of small-subunit processome. Is an ortholog of human PNO1 (partner of NOB1 homolog). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y53C12B.2 | |||||||
| Corresponding_transcript | Y53C12B.2.1 | ||||||||
| Other_sequence | TM00921 | ||||||||
| TMC00430_1 | |||||||||
| CSC00221_1 | |||||||||
| BMC00233_1 | |||||||||
| MH00287 | |||||||||
| JI464425.1 | |||||||||
| JI478484.1 | |||||||||
| HC07161 | |||||||||
| OVC00094_1 | |||||||||
| Dviv_isotig17246 | |||||||||
| CBC00643_1 | |||||||||
| ES739809.1 | |||||||||
| FD515986.1 | |||||||||
| PTC01963_1 | |||||||||
| BG467806.1 | |||||||||
| OVC00216_1 | |||||||||
| AW308625.1 | |||||||||
| FD515083.1 | |||||||||
| Acan_isotig03153 | |||||||||
| FE911324.1 | |||||||||
| HC07895 | |||||||||
| BG310523.1 | |||||||||
| FE916836.1 | |||||||||
| AW208329.1 | |||||||||
| ASC00640_1 | |||||||||
| FE906188.1 | |||||||||
| CR01557 | |||||||||
| Tcir_isotig09796 | |||||||||
| CGC00391_1 | |||||||||
| BF599278.1 | |||||||||
| BE132549.1 | |||||||||
| HC02201 | |||||||||
| Oden_isotig20491 | |||||||||
| JO471995.1 | |||||||||
| AM743566.1 | |||||||||
| RS07813 | |||||||||
| BE491778.1 | |||||||||
| Hbac_isotig05531 | |||||||||
| PT02460 | |||||||||
| PVC03558_1 | |||||||||
| JI470098.1 | |||||||||
| BE132496.1 | |||||||||
| JI176976.1 | |||||||||
| JI481405.1 | |||||||||
| CD374568.1 | |||||||||
| CRC02274_1 | |||||||||
| BE132471.1 | |||||||||
| FG583613.1 | |||||||||
| CGC00250_1 | |||||||||
| Hbac_isotig07170 | |||||||||
| NAC00531_1 | |||||||||
| ES743309.1 | |||||||||
| CJC01478_1 | |||||||||
| Tcol_isotig13845 | |||||||||
| HCC09228_1 | |||||||||
| MHC00988_1 | |||||||||
| FE914649.1 | |||||||||
| FG581696.1 | |||||||||
| WBC00484_1 | |||||||||
| CBC00186_1 | |||||||||
| FE916948.1 | |||||||||
| Dviv_isotig17247 | |||||||||
| GO249521.1 | |||||||||
| HC02271 | |||||||||
| HCC04716_1 | |||||||||
| HBC16890_1 | |||||||||
| PPC05575_1 | |||||||||
| FD514824.1 | |||||||||
| Tcir_isotig10094 | |||||||||
| PPC05940_1 | |||||||||
| TM01681 | |||||||||
| BE202317.1 | |||||||||
| Acan_isotig03154 | |||||||||
| Name_isotig04290 | |||||||||
| RSC03151_1 | |||||||||
| BM00932 | |||||||||
| AS02690 | |||||||||
| JI175110.1 | |||||||||
| EL890146.1 | |||||||||
| TDC03238_1 | |||||||||
| Associated_feature | WBsf665965 | ||||||||
| WBsf665966 | |||||||||
| WBsf665967 | |||||||||
| WBsf989133 | |||||||||
| WBsf1012894 | |||||||||
| WBsf223699 | |||||||||
| WBsf223700 | |||||||||
| WBsf223701 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00076812 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00057256 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00075896 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00009378 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00037405 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00106944 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1027618 | ||||||||
| Expr1035835 | |||||||||
| Expr1160693 | |||||||||
| Expr2007837 | |||||||||
| Expr2026077 | |||||||||
| Drives_construct | WBCnstr00029745 | ||||||||
| Construct_product | WBCnstr00029745 | ||||||||
| Microarray_results (15) | |||||||||
| Expression_cluster (105) | |||||||||
| Interaction (194) | |||||||||
| Map_info | Map | II | Position | 1.70646 | |||||
| Positive | Positive_clone | Y53C12B | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00049828 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00058216 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
