WormBase Tree Display for Gene: WBGene00013144

WBGene00013144 SMap: S_parent: Sequence: Y53C12B
  Identity: Version: 2
    Name: CGC_name: pno-1 Person_evidence: WBPerson260
      Sequence_name: Y53C12B.2
      Molecular_name: Y53C12B.2
        Y53C12B.2.1
        CE14896
      Other_name: CELE_Y53C12B.2 Accession_evidence: NDB BX284602
      Public_name: pno-1
    DB_info: Database: AceView gene 2K30
        WormQTL gene WBGene00013144
        WormFlux gene WBGene00013144
        NDB locus_tag CELE_Y53C12B.2
        Panther gene CAEEL|WormBase=WBGene00013144|UniProtKB=O18216
          family PTHR12826
        NCBI gene 174534
        RefSeq protein NM_063698.5
        SwissProt UniProtAcc O18216
        TREEFAM TREEFAM_ID TF300114
        UniProt_GCRP UniProtAcc O18216
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:54 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 13 Nov 2017 15:54:28 WBPerson1983 Name_change: CGC_name: pno-1
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: pno
    Allele (61)
    Strain: WBStrain00051193
      WBStrain00051907
    RNASeq_FPKM (74)
    GO_annotation: 00031718
      00031719
      00031720
      00031721
      00031722
      00031723
      00031724
      00120072
      00120073
    Contained_in_operon: CEOP2452
    Ortholog: WBGene00024334 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            OMA
            WormBase-Compara
      WBGene00067251 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            WormBase-Compara
      WBGene00134822 Caenorhabditis japonica From_analysis: OMA
            TreeFam
            WormBase-Compara
      WBGene00144829 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            WormBase-Compara
      WBGene00234298 Brugia malayi From_analysis: WormBase-Compara
      CBOVI.g12693 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g12489 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g13315 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g14723 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g9019 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g14995 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g4981 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g1915 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g10278 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP39.g6975 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g18354 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00411.g10492 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-Y53C12B.2 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold629.g8902 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      FL83_08498 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_003638 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g02269 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g9565 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_20184510 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrII_pilon.g5581 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00246764 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00114813 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00256107 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00289075 Trichuris muris From_analysis: WormBase-Compara
      SGD:S000005671 Saccharomyces cerevisiae From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      FB:FBgn0027334 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      ZFIN:ZDB-GENE-040426-1419 Danio rerio From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      HGNC:32790 Homo sapiens From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      MGI:1913499 Mus musculus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      RGD:727882 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
    Structured_description: Automated_description: Predicted to enable RNA binding activity. Predicted to be involved in ribosomal small subunit biogenesis. Predicted to be located in nucleolus. Predicted to be part of small-subunit processome. Is an ortholog of human PNO1 (partner of NOB1 homolog). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: Y53C12B.2
    Corresponding_transcript: Y53C12B.2.1
    Other_sequence (80)
    Associated_feature: WBsf665965
      WBsf665966
      WBsf665967
      WBsf989133
      WBsf1012894
      WBsf223699
      WBsf223700
      WBsf223701
  Experimental_info: RNAi_result: WBRNAi00076812 Inferred_automatically: RNAi_primary
      WBRNAi00057256 Inferred_automatically: RNAi_primary
      WBRNAi00075896 Inferred_automatically: RNAi_primary
      WBRNAi00009378 Inferred_automatically: RNAi_primary
      WBRNAi00037405 Inferred_automatically: RNAi_primary
      WBRNAi00106944 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1027618
      Expr1035835
      Expr1160693
      Expr2007837
      Expr2026077
    Drives_construct: WBCnstr00029745
    Construct_product: WBCnstr00029745
    Microarray_results (15)
    Expression_cluster (105)
    Interaction (194)
  Map_info: Map: II Position: 1.70646
    Positive: Positive_clone: Y53C12B Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00038491
    WBPaper00049828
    WBPaper00055090
    WBPaper00058216
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene