WormBase Tree Display for Gene: WBGene00012980
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WBGene00012980 | SMap | S_parent | Sequence | Y48B6A | ||
---|---|---|---|---|---|---|
Identity | Version | 2 | ||||
Name | CGC_name | efhd-1 | Paper_evidence | WBPaper00041587 | ||
Sequence_name | Y48B6A.6 | |||||
Molecular_name | Y48B6A.6a | |||||
Y48B6A.6a.1 | ||||||
CE32970 | ||||||
Y48B6A.6b | ||||||
CE41852 | ||||||
Y48B6A.6c | ||||||
CE41853 | ||||||
Y48B6A.6a.2 | ||||||
Y48B6A.6b.1 | ||||||
Y48B6A.6c.1 | ||||||
Other_name (2) | ||||||
Public_name | efhd-1 | |||||
DB_info | Database | AceView | gene | 2O479 | ||
WormQTL | gene | WBGene00012980 | ||||
WormFlux | gene | WBGene00012980 | ||||
NDB | locus_tag | CELE_Y48B6A.6 | ||||
Panther | gene | CAEEL|WormBase=WBGene00012980|UniProtKB=Q9U2A6 | ||||
family | PTHR13025 | |||||
NCBI | gene | 175073 | ||||
RefSeq | protein | NM_064560.7 | ||||
NM_182166.7 | ||||||
NM_001129185.5 | ||||||
TREEFAM | TREEFAM_ID | TF320736 | ||||
TrEMBL | UniProtAcc | Q8I0Z7 | ||||
A8XMZ5 | ||||||
Q9U2A6 | ||||||
UniProt_GCRP | UniProtAcc | Q9U2A6 | ||||
Species | Caenorhabditis elegans | |||||
History | Version_change (2) | |||||
Status | Live | |||||
Gene_info | Biotype | SO:0001217 | ||||
Gene_class | efhd | |||||
Allele (338) | ||||||
Strain | WBStrain00001460 | |||||
RNASeq_FPKM (74) | ||||||
GO_annotation | 00005433 | |||||
00119935 | ||||||
Ortholog (37) | ||||||
Structured_description | Concise_description | efhd-1 encodes the C. elegans ortholog of the mammalian EF hand domain-containing proteins EFHD1 and EFHD2; large-scale expression studies report that efhd-1 is expressed in the pharynx, the body wall muscle, and the nervous system. | Paper_evidence | WBPaper00031006 | ||
WBPaper00038072 | ||||||
WBPaper00041587 | ||||||
Curator_confirmed | WBPerson1843 | |||||
Date_last_updated | 24 Nov 2014 00:00:00 | |||||
Automated_description | Predicted to enable calcium ion binding activity. Is an ortholog of human EFHD1 (EF-hand domain family member D1). | Paper_evidence | WBPaper00065943 | |||
Curator_confirmed | WBPerson324 | |||||
WBPerson37462 | ||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | |||||
Date_last_updated | 29 Nov 2023 00:00:00 | |||||
Molecular_info | Corresponding_CDS | Y48B6A.6a | ||||
Y48B6A.6b | ||||||
Y48B6A.6c | ||||||
Corresponding_CDS_history | Y48B6A.6:wp92 | |||||
Y48B6A.6b:wp184 | ||||||
Corresponding_transcript | Y48B6A.6a.1 | |||||
Y48B6A.6a.2 | ||||||
Y48B6A.6b.1 | ||||||
Y48B6A.6c.1 | ||||||
Other_sequence (40) | ||||||
Associated_feature | WBsf644832 | |||||
WBsf658394 | ||||||
WBsf658395 | ||||||
WBsf990647 | ||||||
WBsf990648 | ||||||
WBsf1013792 | ||||||
WBsf222429 | ||||||
WBsf222430 | ||||||
Experimental_info | RNAi_result | WBRNAi00056884 | Inferred_automatically | RNAi_primary | ||
WBRNAi00037235 | Inferred_automatically | RNAi_primary | ||||
WBRNAi00020738 | Inferred_automatically | RNAi_primary | ||||
Expr_pattern | Chronogram1627 | |||||
Expr7002 | ||||||
Expr1017855 | ||||||
Expr1035758 | ||||||
Expr1160336 | ||||||
Expr2011187 | ||||||
Expr2029423 | ||||||
Drives_construct | WBCnstr00002338 | |||||
Microarray_results (30) | ||||||
Expression_cluster (218) | ||||||
Interaction (11) | ||||||
Map_info | Map | II | Position | 22.5653 | ||
Positive | Positive_clone | Y48B6A | Inferred_automatically | From sequence, transcript, pseudogene data | ||
Pseudo_map_position | ||||||
Reference | WBPaper00038072 | |||||
WBPaper00038491 | ||||||
WBPaper00041587 | ||||||
WBPaper00055090 | ||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||
Method | Gene |