WormBase Tree Display for Gene: WBGene00012976
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| WBGene00012976 | SMap | S_parent | Sequence | Y48A6C | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | |||||||
| Name | CGC_name | sup-35 | Paper_evidence | WBPaper00033464 | |||||
| Person_evidence | WBPerson261 | ||||||||
| Sequence_name | Y48A6C.3 | ||||||||
| Molecular_name | Y48A6C.3 | ||||||||
| Y48A6C.3.1 | |||||||||
| CE19198 | |||||||||
| Other_name | ztf-21 | Person_evidence | WBPerson1997 | ||||||
| CELE_Y48A6C.3 | Accession_evidence | NDB | BX284603 | ||||||
| Public_name | sup-35 | ||||||||
| DB_info | Database | AceView | gene | 3M208 | |||||
| WormQTL | gene | WBGene00012976 | |||||||
| WormFlux | gene | WBGene00012976 | |||||||
| NDB | locus_tag | CELE_Y48A6C.3 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00012976|UniProtKB=Q9XWK6 | |||||||
| family | PTHR16056 | ||||||||
| NCBI | gene | 190015 | |||||||
| RefSeq | protein | NM_067031.2 | |||||||
| TREEFAM | TREEFAM_ID | TF315854 | |||||||
| TrEMBL | UniProtAcc | Q9XWK6 | |||||||
| UniProt_GCRP | UniProtAcc | Q9XWK6 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:54 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 18 Apr 2008 09:32:24 | WBPerson2970 | Name_change | CGC_name | ztf-21 | ||||
| 3 | 22 Jul 2009 17:01:22 | WBPerson1847 | Event | Acquires_merge | WBGene00006340 | ||||
| Acquires_merge | WBGene00006340 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | sup | ||||||||
| Allele (66) | |||||||||
| Legacy_information | See also e2220, e2221, e2223 | ||||||||
| [Schnabel et al] recessive suppressor of ts alleles of pha-1 (e2123 and t1001). No other phenotype. NA>100 | |||||||||
| [C.elegansII] e2220 : recessive suppressor of ts alleles of pha-1 (e2123 and t1001). No other phenotype. OA>100: e2221, e2223, etc. [Schnabel et al. 1991] | |||||||||
| Strain | WBStrain00005853 | ||||||||
| WBStrain00007733 | |||||||||
| WBStrain00047520 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00103629 | ||||||||
| 00103630 | |||||||||
| 00103631 | |||||||||
| 00103632 | |||||||||
| 00103633 | |||||||||
| 00103634 | |||||||||
| 00103635 | |||||||||
| 00103636 | |||||||||
| 00103637 | |||||||||
| Contained_in_operon | CEOP3823 | ||||||||
| Ortholog (37) | |||||||||
| Paralog | WBGene00007190 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00007786 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00009369 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00011501 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00015855 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00018125 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| WBGene00020711 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| WBGene00020070 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00012977 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Automated_description | Enables microtubule binding activity. Located in cytoplasm and nucleus. Expressed in head muscle; intestine; pharyngeal cell; and pharynx. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y48A6C.3 | |||||||
| Corresponding_transcript | Y48A6C.3.1 | ||||||||
| Associated_feature (11) | |||||||||
| Transcription_factor | WBTranscriptionFactor001097 | ||||||||
| Experimental_info | RNAi_result (17) | ||||||||
| Expr_pattern | Expr7718 | ||||||||
| Expr8993 | |||||||||
| Expr1016242 | |||||||||
| Expr1035754 | |||||||||
| Expr1160322 | |||||||||
| Expr2017130 | |||||||||
| Expr2035266 | |||||||||
| Drives_construct | WBCnstr00012863 | ||||||||
| WBCnstr00013661 | |||||||||
| WBCnstr00014856 | |||||||||
| WBCnstr00014858 | |||||||||
| Construct_product | WBCnstr00013661 | ||||||||
| WBCnstr00014858 | |||||||||
| WBCnstr00017372 | |||||||||
| WBCnstr00017373 | |||||||||
| WBCnstr00017374 | |||||||||
| WBCnstr00017375 | |||||||||
| WBCnstr00017376 | |||||||||
| WBCnstr00018921 | |||||||||
| Microarray_results (12) | |||||||||
| Expression_cluster (103) | |||||||||
| Interaction (22) | |||||||||
| Map_info | Map | III | Position | 6.04481 | Error | 0.041366 | |||
| Well_ordered | |||||||||
| Positive | Positive_clone | Y48A6C | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 2786 | |||||||
| Pos_neg_data | 7377 | ||||||||
| 7376 | |||||||||
| Pseudo_map_position | |||||||||
| Reference (14) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
