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WormBase Tree Display for Gene: WBGene00012668

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Name Class

WBGene00012668SMapS_parentSequenceY39B6A
IdentityVersion1
NameSequence_nameY39B6A.5
Molecular_nameY39B6A.5a
Y39B6A.5a.1
CE21672
Y39B6A.5b
CE45367
Y39B6A.5b.1
Other_nameCELE_Y39B6A.5Accession_evidenceNDBBX284605
Public_nameY39B6A.5
DB_infoDatabaseAceViewgene5T632
WormQTLgeneWBGene00012668
WormFluxgeneWBGene00012668
NDBlocus_tagCELE_Y39B6A.5
NCBIgene180260
RefSeqproteinNM_001269916.3
NM_001269915.2
TrEMBLUniProtAccE0R7L8
Q9NET2
UniProt_GCRPUniProtAccQ9NET2
SpeciesCaenorhabditis elegans
HistoryVersion_change126 May 2004 16:54:54WBPerson1971EventImportedInitial conversion from CDS class of WS125
StatusLive
Gene_infoBiotypeSO:0001217
Allele (35)
RNASeq_FPKM (74)
Ortholog (11)
Structured_descriptionAutomated_descriptionEnriched in several structures, including coelomocyte; head mesodermal cell; rectal gland cell; sensory neurons; and somatic gonad precursor based on tiling array; RNA-seq; single-cell RNA-seq; and microarray studies. Is affected by several genes including daf-2; rrf-3; and elt-2 based on RNA-seq; microarray; and tiling array studies. Is affected by sixteen chemicals including rotenone; Alovudine; and stavudine based on RNA-seq and microarray studies.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSY39B6A.5a
Y39B6A.5b
Corresponding_transcriptY39B6A.5a.1
Y39B6A.5b.1
Other_sequenceCSC01681_1
MCC04752_1
FD517478.1
MC04542
CBC07739_1
Associated_featureWBsf653552
WBsf653553
WBsf1003154
WBsf1003155
WBsf1003156
WBsf235208
Experimental_infoRNAi_resultWBRNAi00056210Inferred_automaticallyRNAi_primary
WBRNAi00020374Inferred_automaticallyRNAi_primary
WBRNAi00009759Inferred_automaticallyRNAi_primary
WBRNAi00036915Inferred_automaticallyRNAi_primary
Expr_patternExpr1015538
Expr1159703
Expr2007377
Expr2025612
Microarray_results (17)
Expression_clusterWBPaper00031040:TGF-beta_adult_upregulated
WBPaper00032031:DConiospora_downregulated_cDNA_12h
WBPaper00037950:all-neurons_L2-larva_expressed
WBPaper00037950:AVA-neuron_L1-larva_expressed
WBPaper00037950:bodywall-muscle_L2-larva_expressed
WBPaper00037950:bodywall-muscle_larva_enriched
WBPaper00037950:coelomocytes_embryo_enriched
WBPaper00037950:glr-1(+)-neurons_L2-larva_expressed
WBPaper00037950:hypodermis_L3-L4-larva_expressed
WBPaper00037950:intestine_L2-larva_expressed
WBPaper00037950:intestine_larva_enriched
WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed
WBPaper00038118:aak-2(gt33)_downregulated
WBPaper00038168:lin-15B(n744)_upregulated
WBPaper00038438:D.coniospora_12hr_upregulated_RNAseq
WBPaper00038438:E.faecalis_24hr_downregulated_RNAseq
WBPaper00038438:Harposporium_24hr_upregulated_RNAseq
WBPaper00038438:P.lumniescens_24hr_downregulated_RNAseq
WBPaper00038438:S.marcescens_24hr_downregulated_RNAseq
WBPaper00040209:B.thuringiensis_upregulated_MY18
WBPaper00040560:hpl-2_embryo_upregulated
WBPaper00040560:hpl-2_L3_upregulated
WBPaper00042561:smgl-1(RNAi)_upregulated
WBPaper00044426:rotenone_24h_upregulated
WBPaper00044736:flat_dev_expression
WBPaper00045314:S.aureus-induced_hlh-30(tm1978)
WBPaper00045314:S.aureus-induced_N2
WBPaper00045417:128Q-huntingtin_downreglated
WBPaper00045521:Gender_Neutral
WBPaper00045774:clk-1_upregulated
WBPaper00045934:wrn-1(gk99)_downregulated
WBPaper00046497:B.thuringiensis_0.1mix_upregulated_6h
WBPaper00046497:B.thuringiensis_0.1mix_upregulated_12h
WBPaper00046497:B.thuringiensis_0.5mix_upregulated_6h
WBPaper00046497:B.thuringiensis_0.5mix_upregulated_12h
WBPaper00046509:htz-1(ok3099)_upregulated
WBPaper00047131:daf-2(e1370)_upregulated_N2-background
WBPaper00048988:neuron_expressed
WBPaper00049498:npr-1(ur89)_regulated_1
WBPaper00049545:cco-1(RNAi)_downregulated
WBPaper00049545:jmjd-3.1(+)_downregulated
WBPaper00049736:daf-2(e1370)_upregulated_15deg-then-25deg(12hr)
WBPaper00050234:lin-28(RNAi)_downregulated
WBPaper00050344:ASER-neuron_enriched
WBPaper00050370:dpy-21(e428)_L3_upregulated
WBPaper00050488:20C_vs_25C_regulated_mir-34(OverExpression)_adult
WBPaper00050488:20C_vs_25C_regulated_N2_adult
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_adult_25C
WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C
WBPaper00050488:mir-34(OverExpression)_vs_N2_regulated_adult_20C
WBPaper00050488:N2_vs_mir-34(gk437)_regulated_dauer_20C
WBPaper00050488:N2_vs_mir-34(OverExpression)_regulated_adult_25C
WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adult
WBPaper00050903:mir-35-41(nDf50)_25C_upregulated
WBPaper00050990:arcade_intestinal-valve_expressed
WBPaper00050990:GABAergic-neuron_expressed
WBPaper00050990:hypodermis_expressed
WBPaper00050990:intestine_expressed
WBPaper00050990:NMDA-neuron_expressed
WBPaper00050990:pharynx_expressed
WBPaper00051039:intestine_enriched
WBPaper00051404:alg-2(ok304)_downregulated
WBPaper00051558:aging_regulated
WBPaper00052884:emb-4(hc60)_upregulated
WBPaper00053184:sma-2(rax5)_upregulated
WBPaper00053184:sma-4(rax3)_upregulated
WBPaper00053295:lin-22(ot269)_upregulated
WBPaper00053302:alovudine_72h_regulated
WBPaper00053302:stavudine_24h_regulated
WBPaper00053302:zidovudine_24h_regulated
WBPaper00053388:dauer_regulated_Cluster4
WBPaper00053599:female_vs_male_downregulated
WBPaper00053606:N2_vs_elt-2(ca15);elt-7(tm840)_upregulated
WBPaper00053713:Starvation-induced_postdauer_vs_control_upregulated
WBPaper00053810:daf-2(e1370)_upregulated
WBPaper00053810:nuo-6(qm200)_upregulated
WBPaper00055354:Psora_downregulated
WBPaper00055354:Rapamycin-Allantoin_downregulated
WBPaper00055354:Rapamycin-Metformin_downregulated
WBPaper00055354:Rapamycin-Rifampicin-Psora_upregulated
WBPaper00055862:antimycin_damt-1(gk961032)_regulated
WBPaper00055941:nuo-6(qm200)_upregulated
WBPaper00056167:Cry5B_downregulated
WBPaper00056169:rrf-3(pk1426)_upregulated_embryo
WBPaper00056826:hmc_biased
WBPaper00056997:nmad-1(ok3133)_upregulated_germline_25C
WBPaper00057068:Cadmium_upregulated
WBPaper00057068:ints-4(RNAi)_upregulated
WBPaper00058598:mex-1(or286)_upregulated
WBPaper00058598:mex-3(eu149)_upregulated
WBPaper00058598:spn-4(tm291)_upregulated
WBPaper00058948:PA14_downregulated
WBPaper00059356:BAZ-2_SET-6_interacting
WBPaper00059356:set-6(ok2195)_baz-2(tm0235)_regulated
WBPaper00059537:ngn-1(ok2200)_upregulated
WBPaper00059664:srbc-48(ac23)_upregulated
WBPaper00059895:wounding_upregulated
WBPaper00059987:Wounding_upregulated
WBPaper00060100:SiNP_downregulated_mRNA
WBPaper00060358:B.thuringiensis_non-pathogen_regulated_elt-2(RNAi)
WBPaper00060358:B.thuringiensis_pathogen_regulated_elt-2(RNAi)
WBPaper00060358:B.thuringiensis_pathogen_regulated_N2
WBPaper00060661:sensory-neuron_enriched
WBPaper00060811:L1_vs_adult_downregulated_neural
WBPaper00061045:Y56A3A.22(cck200)_upregulated
WBPaper00061340:Coelomocyte
WBPaper00061340:hmc
WBPaper00061340:hmc_and_homolog
WBPaper00061340:hmc_homolog
WBPaper00061340:Pharyngeal_intestinal_valve
WBPaper00061340:Rectal_gland
WBPaper00061340:Z1_Z4
WBPaper00061341:28C_24h_upregulated
WBPaper00061527:C32F10.4-D1086.2
WBPaper00061651:Coelomocyte_enriched
WBPaper00061651:Rectal_gland_enriched
WBPaper00061823:mex-3(spr9)_downregulated
WBPaper00062159:hda-2(ok1479)_upregulated
WBPaper00062325:muscle_depleted_coding-RNA
WBPaper00064005:starvation_downregulated_aptf-1(gk794)_protein
WBPaper00064005:starvation_downregulated_N2_protein
WBPaper00064088:Day-1-adult_vs_L4_upregulated_daf-16(mu86);glp-1(e2141)
WBPaper00064088:Day-1-adult_vs_L4_upregulated_fem-3(q20)
WBPaper00064088:Day-1-adult_vs_L4_upregulated_glp-1(e2141)
WBPaper00064088:Day-3-adult_vs_L4_upregulated_daf-16(mu86);glp-1(e2141)
WBPaper00064088:Day-3-adult_vs_L4_upregulated_fem-3(q20)
WBPaper00064088:Day-3-adult_vs_L4_upregulated_glp-1(e2141)
WBPaper00064229:B.thuringiensis-Cry5Ba_downregulated
WBPaper00064716:paraquat_downregulated
WBPaper00065120:body-muscle-transcriptome
WBPaper00065841:12_0
WBPaper00065841:26_2
WBPaper00065841:30_4
WBPaper00065975:P-body_vs_oocyte_depleted
WBPaper00065975:P-body_vs_WholeAnimal_depleted
WBPaper00065993:glp-1(e2141)_upregulated
WBPaper00066146:germline-inx-14(RNAi)_upregulated_PA14
WBPaper00066232:ash-2(RNAi)_downregulated_WT
cgc4386_cluster_2_2
cgc4489_group_12
WBPaper00006465:IV_ethanol_late_repression
WBPaper00024393:strongly_regulated_dauer_genes
WBPaper00025141:N2_Expressed_Genes
WBPaper00026929:sir-2.1_overexpression_regulated
WBPaper00026980:intestine_enriched
WBPaper00030985:Photorhabdus_luminescens_upregulated
WBPaper00031003:hlh_1_enriched
WBPaper00034757:up_by_oxidative_stress
WBPaper00036286:Pattern_I
WBPaper00037695:LD_3-day
WBPaper00038231:Cry5B_1.5-fold_upregulated
WBPaper00038231:Cry5B_2-fold_upregulated
WBPaper00040184:hcf-1nc_sir-2.1nc_daf-2up
WBPaper00040603:tdp-1(lf)_up_vs_N2_FC_1.2
WBPaper00040603:tdp-1(lf)_up_vs_N2_FC_1.5
WBPaper00040823:alg-1(gk214)_upregulated
WBPaper00040858:eQTL_regulated_old
WBPaper00040985:AIN-2_asynchronous_intestine
WBPaper00041002:HF_11d_2.0mM_Down
WBPaper00041606:CE_X.nematophila_regulated
WBPaper00041939:control_vs_EtBr-exposed_48h
WBPaper00041939:EtBr-exposed_vs_UVC-exposed_48h
WBPaper00041960:N2_fasting_upregulated_9hto12h
WBPaper00041960:N2_fasting_upregulated_anytime
WBPaper00042274:tbx-2(bx59)_upregulated
WBPaper00044091:Bpseudomallei_induced_4h
WBPaper00044091:Bpseudomallei_induced_8h
WBPaper00048989:eat-2(ad465)_rapamycin_downregulated
Map_infoPositivePositive_cloneY39B6AInferred_automaticallyFrom sequence, transcript, pseudogene data
Interpolated_map_positionV20.2083
MethodGene