WormBase Tree Display for Gene: WBGene00012583
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WBGene00012583 | SMap | S_parent | Sequence | Y38E10A | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | clec-4 | Person_evidence | WBPerson655 | |||||
Sequence_name | Y38E10A.5 | ||||||||
Molecular_name | Y38E10A.5 | ||||||||
Y38E10A.5.1 | |||||||||
CE28701 | |||||||||
Other_name | CELE_Y38E10A.5 | Accession_evidence | NDB | BX284602 | |||||
Public_name | clec-4 | ||||||||
DB_info | Database | AceView | gene | 2M868 | |||||
WormQTL | gene | WBGene00012583 | |||||||
WormFlux | gene | WBGene00012583 | |||||||
NDB | locus_tag | CELE_Y38E10A.5 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00012583|UniProtKB=Q9NAK5 | |||||||
family | PTHR22991 | ||||||||
NCBI | gene | 189654 | |||||||
RefSeq | protein | NM_064287.4 | |||||||
TREEFAM | TREEFAM_ID | TF351663 | |||||||
TrEMBL | UniProtAcc | Q9NAK5 | |||||||
UniProt_GCRP | UniProtAcc | Q9NAK5 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 26 May 2004 16:54:54 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
2 | 29 Apr 2005 13:53:45 | WBPerson2970 | Name_change | CGC_name | clec-4 | ||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | clec | ||||||||
Allele (68) | |||||||||
Possibly_affected_by | WBVar02154113 | ||||||||
Strain | WBStrain00032353 | ||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00096145 | ||||||||
Ortholog (13) | |||||||||
Paralog (52) | |||||||||
Structured_description | Concise_description | clec-4 encodes a C-type lectin; clec-4 expression is upregulated in response to stressors, including pathogens and ionizing radiation. | Paper_evidence | WBPaper00041533 | |||||
WBPaper00028789 | |||||||||
Curator_confirmed | WBPerson1843 | ||||||||
Date_last_updated | 01 May 2013 00:00:00 | ||||||||
Automated_description | Acts upstream of or within with a positive effect on feeding behavior. Expressed in amphid neurons; int1DL; int1DR; int1VL; and int1VR. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | Y38E10A.5 | |||||||
Corresponding_CDS_history | Y38E10A.5:wp57 | ||||||||
Corresponding_transcript | Y38E10A.5.1 | ||||||||
Associated_feature | WBsf224080 | ||||||||
WBsf224081 | |||||||||
Experimental_info | RNAi_result (3) | ||||||||
Expr_pattern | Expr15811 | ||||||||
Expr1020709 | |||||||||
Expr1035569 | |||||||||
Expr1159549 | |||||||||
Expr2010182 | |||||||||
Expr2028424 | |||||||||
Drives_construct | WBCnstr00042531 | ||||||||
Microarray_results (15) | |||||||||
Expression_cluster (357) | |||||||||
Interaction | WBInteraction000537372 | ||||||||
WBInteraction000537373 | |||||||||
WBInteraction000537392 | |||||||||
WBInteraction000537393 | |||||||||
WBInteraction000537406 | |||||||||
WBProcess | WBbiopr:00000039 | ||||||||
WBbiopr:00000092 | |||||||||
Map_info | Map | II | Position | 10.4075 | Error | 0.015845 | |||
Positive | Positive_clone | Y38E10A | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Reference (12) | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |