WormBase Tree Display for Gene: WBGene00012158

WBGene00012158 SMap: S_parent: Sequence: CHROMOSOME_X
  Identity: Version: 2
    Name: CGC_name: ucr-2.1 Paper_evidence: WBPaper00027699
      Sequence_name: VW06B3R.1
      Molecular_name: VW06B3R.1a
        VW06B3R.1a.1
        CE20123
        VW06B3R.1b
        CE26825
        VW06B3R.1b.1
      Other_name: CELE_VW06B3R.1 Accession_evidence: NDB BX284606
      Public_name: ucr-2.1
    DB_info: Database (12)
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:53 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 27 Jul 2006 17:13:38 WBPerson2970 Name_change: CGC_name: ucr-2.1
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: ucr
    Allele (51)
    RNASeq_FPKM (74)
    GO_annotation: 00013090
      00119337
    Ortholog: WBGene00077284 Caenorhabditis remanei From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00036218 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            Inparanoid_8
            WormBase-Compara
      WBGene00156745 Caenorhabditis brenneri From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00132861 Caenorhabditis japonica From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      CBOVI.g3550 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g4068 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g181 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g11246 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g6164 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g15240 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g12119 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g8369 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g12018 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP39.g17312 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP39.g20675 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP39.g25548 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g4817 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00147.g5599 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cang_2012_03_13_21392.g26655 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-ucr-2.1 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold629.g13395 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00700.g14552 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_02293 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_023252 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g00693 Oscheius tipulae From_analysis: WormBase-Compara
      Sp34_X0050600 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrX_pilon.g20180 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00263868 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00285720 Trichuris muris From_analysis: WormBase-Compara
      WBGene00300750 Trichuris muris From_analysis: WormBase-Compara
      SGD:S000006395 Saccharomyces cerevisiae From_analysis: Hieranoid
            OrthoFinder
            PhylomeDB
      FB:FBgn0250814 Drosophila melanogaster From_analysis: Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            PhylomeDB
            SonicParanoid
      ZFIN:ZDB-GENE-030131-1269 Danio rerio From_analysis: Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            PhylomeDB
      ZFIN:ZDB-GENE-040718-405 Danio rerio From_analysis: Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            PhylomeDB
      HGNC:12586 Homo sapiens From_analysis: Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            PhylomeDB
      MGI:1914253 Mus musculus From_analysis: Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            PhylomeDB
      RGD:1359150 Rattus norvegicus From_analysis: Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            PhylomeDB
    Paralog: WBGene00011679 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00020757 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00015481 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00013492 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00013880 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00015360 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00018426 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00018963 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00022159 Caenorhabditis elegans From_analysis: WormBase-Compara
    Structured_description: Automated_description: Predicted to enable metal ion binding activity. Predicted to be located in mitochondrion. Expressed in gonad. Human ortholog(s) of this gene implicated in mitochondrial complex III deficiency nuclear type 5. Is an ortholog of human UQCRC2 (ubiquinol-cytochrome c reductase core protein 2). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Disease_info: Potential_model: DOID:0080114 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:12586)
  Molecular_info: Corresponding_CDS: VW06B3R.1a
      VW06B3R.1b
    Corresponding_CDS_history: VW06B3R.1:wp42
    Corresponding_transcript: VW06B3R.1a.1
      VW06B3R.1b.1
    Other_sequence: FK801780.1
      FK806288.1
      CRC01263_1
      Hbac_isotig01807
      FK801198.1
      FF681215.1
      HBC05626_1
      CBC11320_1
      EX914074.1
      CR01924
    Associated_feature: WBsf648578
      WBsf1007160
      WBsf1007161
      WBsf1007162
      WBsf1007163
      WBsf1023963
      WBsf1023964
      WBsf236450
      WBsf236451
  Experimental_info: RNAi_result: WBRNAi00112912 Inferred_automatically: RNAi_primary
      WBRNAi00102821 Inferred_automatically: RNAi_primary
      WBRNAi00112852 Inferred_automatically: RNAi_primary
      WBRNAi00036124 Inferred_automatically: RNAi_primary
      WBRNAi00019439 Inferred_automatically: RNAi_primary
      WBRNAi00112792 Inferred_automatically: RNAi_primary
      WBRNAi00054477 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr13104
      Expr1015036
      Expr1035379
      Expr1158023
      Expr2017738
      Expr2035877
    Drives_construct: WBCnstr00030101
    Construct_product: WBCnstr00030101
    Antibody: WBAntibody00001109
    Microarray_results (31)
    Expression_cluster (192)
    Interaction (91)
  Map_info: Map: X Position: 6.99559
    Positive: Positive_clone: VW06B3R Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00027699
    WBPaper00030701
    WBPaper00038491
    WBPaper00055090
    WBPaper00059440
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
    [171016 pad] Modified Map position as it was a reverse physical that could not be fixed by automated methods. (6.99219)
    [200811 gw3] Modified Map position as it was a reverse physical that could not be fixed by automated methods. (6.99219)
  Method: Gene