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WormBase Tree Display for Gene: WBGene00012117

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Name Class

WBGene00012117SMapS_parentSequenceCHROMOSOME_V
IdentityVersion1
NameSequence_nameT28B11.1
Molecular_nameT28B11.1a
T28B11.1a.1
CE14335
T28B11.1b
CE47990
T28B11.1a.2
T28B11.1b.1
Other_nameCELE_T28B11.1Accession_evidenceNDBBX284605
Public_nameT28B11.1
DB_infoDatabaseAceViewgene5L194
WormQTLgeneWBGene00012117
WormFluxgeneWBGene00012117
NDBlocus_tagCELE_T28B11.1
NCBIgene179487
RefSeqproteinNM_073334.8
NM_001276928.3
TrEMBLUniProtAccK8F7S4
Q22842
UniProt_GCRPUniProtAccQ22842
SpeciesCaenorhabditis elegans
HistoryVersion_change126 May 2004 16:54:53WBPerson1971EventImportedInitial conversion from CDS class of WS125
StatusLive
Gene_infoBiotypeSO:0001217
Allele (304)
RNASeq_FPKM (74)
OrthologWBGene00031228Caenorhabditis briggsaeFrom_analysisHillier-set
OrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00147085Caenorhabditis brenneriFrom_analysisOMA
Inparanoid_8
WormBase-Compara
WBGene00065013Caenorhabditis remaneiFrom_analysisOMA
Inparanoid_8
WormBase-Compara
WBGene00128463Caenorhabditis japonicaFrom_analysisInparanoid_8
WormBase-Compara
WBGene00231400Brugia malayiFrom_analysisWormBase-Compara
CBOVI.g482Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g6484Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g10325Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g8538Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g17636Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g1084Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g9541Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g1676Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g24360Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g1525Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cni-T28B11.1Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold629.g15547Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00391.g10632Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_24051Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_016469Caenorhabditis remaneiFrom_analysisWormBase-Compara
Sp34_50298610Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrV_pilon.g15585Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00243288Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00108524Pristionchus pacificusFrom_analysisWormBase-Compara
Structured_descriptionConcise_descriptionT28B11.1 encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp1 or with other proteins; about 5% to 15% of T28B11.1 transcripts are RNA edited to change A to G resulting in a change to residue 369 from an K to a E.Paper_evidenceWBPaper00012854
WBPaper00045975
Curator_confirmedWBPerson1843
WBPerson567
WBPerson4025
Date_last_updated29 Dec 2014 00:00:00
Automated_descriptionEnriched in coelomocyte; germ line; mc3; neurons; and ventral nerve cord based on microarray; tiling array; RNA-seq; and single-cell RNA-seq studies. Is affected by several genes including daf-16; daf-12; and hsf-1 based on tiling array; microarray; and RNA-seq studies. Is affected by fifteen chemicals including Cry5B; Zidovudine; and Rifampin based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: F-box domain; F-box-like domain superfamily; and Phosphorylation site.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDST28B11.1a
T28B11.1b
Corresponding_transcriptT28B11.1a.1
T28B11.1a.2
T28B11.1b.1
Other_sequenceCRC10724_1
CRC12102_1
MC04254
CSC02370_1
CR07406
MC00389
CRC00865_1
CBC07350_1
CR01510
FD516868.1
Associated_feature (30)
Experimental_infoRNAi_resultWBRNAi00019378Inferred_automaticallyRNAi_primary
WBRNAi00054377Inferred_automaticallyRNAi_primary
Expr_patternExpr1016789
Expr1035354
Expr1157925
Expr2006596
Expr2024813
Microarray_results (24)
Expression_cluster (190)
InteractionWBInteraction000238924
WBInteraction000246544
WBInteraction000340564
WBInteraction000393246
WBInteraction000461689
WBInteraction000570159
Map_infoPositivePositive_cloneT28B11Inferred_automaticallyFrom sequence, transcript, pseudogene data
Interpolated_map_positionV2.74512
ReferenceWBPaper00012854
MethodGene