WormBase Tree Display for Gene: WBGene00012117
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| WBGene00012117 | SMap | S_parent | Sequence | CHROMOSOME_V | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | Sequence_name | T28B11.1 | |||||||
| Molecular_name | T28B11.1a | ||||||||
| T28B11.1a.1 | |||||||||
| CE14335 | |||||||||
| T28B11.1b | |||||||||
| CE47990 | |||||||||
| T28B11.1a.2 | |||||||||
| T28B11.1b.1 | |||||||||
| Other_name | CELE_T28B11.1 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | T28B11.1 | ||||||||
| DB_info | Database | AceView | gene | 5L194 | |||||
| WormQTL | gene | WBGene00012117 | |||||||
| WormFlux | gene | WBGene00012117 | |||||||
| NDB | locus_tag | CELE_T28B11.1 | |||||||
| NCBI | gene | 179487 | |||||||
| RefSeq | protein | NM_073334.8 | |||||||
| NM_001276928.3 | |||||||||
| TrEMBL | UniProtAcc | K8F7S4 | |||||||
| Q22842 | |||||||||
| UniProt_GCRP | UniProtAcc | Q22842 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:53 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Allele (304) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog (24) | |||||||||
| Structured_description | Concise_description | T28B11.1 encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp1 or with other proteins; about 5% to 15% of T28B11.1 transcripts are RNA edited to change A to G resulting in a change to residue 369 from an K to a E. | Paper_evidence | WBPaper00012854 | |||||
| WBPaper00045975 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| WBPerson567 | |||||||||
| WBPerson4025 | |||||||||
| Date_last_updated | 29 Dec 2014 00:00:00 | ||||||||
| Automated_description | Enriched in coelomocyte; germ line; mc3; neurons; and ventral nerve cord based on microarray; tiling array; RNA-seq; and single-cell RNA-seq studies. Is affected by several genes including daf-16; daf-12; and hsf-1 based on tiling array; microarray; and RNA-seq studies. Is affected by fifteen chemicals including Cry5B; Zidovudine; and Rifampin based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: F-box domain; F-box-like domain superfamily; and Phosphorylation site. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | T28B11.1a | |||||||
| T28B11.1b | |||||||||
| Corresponding_transcript | T28B11.1a.1 | ||||||||
| T28B11.1a.2 | |||||||||
| T28B11.1b.1 | |||||||||
| Other_sequence | CRC10724_1 | ||||||||
| CRC12102_1 | |||||||||
| MC04254 | |||||||||
| CSC02370_1 | |||||||||
| CR07406 | |||||||||
| MC00389 | |||||||||
| CRC00865_1 | |||||||||
| CBC07350_1 | |||||||||
| CR01510 | |||||||||
| FD516868.1 | |||||||||
| Associated_feature (30) | |||||||||
| Experimental_info | RNAi_result | WBRNAi00019378 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00054377 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1016789 | ||||||||
| Expr1035354 | |||||||||
| Expr1157925 | |||||||||
| Expr2006596 | |||||||||
| Expr2024813 | |||||||||
| Microarray_results | SMD_T28B11.1 | ||||||||
| 174630_at | |||||||||
| 182269_at | |||||||||
| A_12_P101936 | |||||||||
| A_12_P134075 | |||||||||
| Aff_T28B11.1 | |||||||||
| GPL13394_WBGene00012117 | |||||||||
| GPL13914_T28B11.1 | |||||||||
| GPL14144_T28B11.1_1069-1128_0.890_16_A | |||||||||
| GPL14144_T28B11.1_1303-1362_0.932_5_C | |||||||||
| GPL14144_T28B11.1_774-833_0.855_46_B | |||||||||
| GPL19516_CGZ0037388 | |||||||||
| GPL19516_CGZ0037389 | |||||||||
| GPL19516_CGZ0037390 | |||||||||
| GPL19516_CGZ0037391 | |||||||||
| GPL21109_T28B11.1a.1 | |||||||||
| GPL21109_T28B11.1b.1 | |||||||||
| GPL3518_CE14335 | |||||||||
| GPL8304_CE_WBGene00012117_A | |||||||||
| GPL8673_T28B11_1P00222 | |||||||||
| GPL8673_T28B11_1P00648 | |||||||||
| GPL8673_T28B11_1P01273 | |||||||||
| GPL9450_T28B11.1 | |||||||||
| cea2.c.38877 | |||||||||
| Expression_cluster (190) | |||||||||
| Interaction | WBInteraction000238924 | ||||||||
| WBInteraction000246544 | |||||||||
| WBInteraction000340564 | |||||||||
| WBInteraction000393246 | |||||||||
| WBInteraction000461689 | |||||||||
| WBInteraction000570159 | |||||||||
| Map_info | Positive | Positive_clone | T28B11 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||
| Interpolated_map_position | V | 2.74512 | |||||||
| Reference | WBPaper00012854 | ||||||||
| Method | Gene |
