WormBase Tree Display for Gene: WBGene00012111
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| WBGene00012111 | SMap | S_parent | Sequence | T28A8 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | Sequence_name | T28A8.5 | |||||||
| Molecular_name | T28A8.5a | ||||||||
| T28A8.5a.1 | |||||||||
| CE44302 | |||||||||
| T28A8.5b | |||||||||
| CE54374 | |||||||||
| T28A8.5b.1 | |||||||||
| Other_name | CELE_T28A8.5 | Accession_evidence | NDB | BX284603 | |||||
| Public_name | T28A8.5 | ||||||||
| DB_info | Database | AceView | gene | 3O591 | |||||
| WormQTL | gene | WBGene00012111 | |||||||
| WormFlux | gene | WBGene00012111 | |||||||
| NDB | locus_tag | CELE_T28A8.5 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00012111|UniProtKB=Q9XU08 | |||||||
| family | PTHR23362 | ||||||||
| NCBI | gene | 189008 | |||||||
| RefSeq | protein | NM_001395777.1 | |||||||
| NM_067392.6 | |||||||||
| TrEMBL | UniProtAcc | Q9XU08 | |||||||
| A0A8D9I8M7 | |||||||||
| UniProt_GCRP | UniProtAcc | Q9XU08 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:53 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 04 Nov 2009 15:33:56 | WBPerson1983 | Event | Split_into | WBGene00194852 | ||||
| Split_into | WBGene00194852 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Allele (15) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Contained_in_operon | CEOP3804 | ||||||||
| Ortholog (18) | |||||||||
| Paralog (37) | |||||||||
| Structured_description | Automated_description | Enriched in OLL; PVD; germ line; and germline precursor cell based on microarray; tiling array; RNA-seq; and single-cell RNA-seq studies. Is affected by several genes including daf-2; hsf-1; and sir-2.1 based on microarray; tiling array; and RNA-seq studies. Is affected by eight chemicals including rotenone; manganese chloride; and Rifampin based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: SPK domain and Domain of unknown function (DUF545). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | T28A8.5a | |||||||
| T28A8.5b | |||||||||
| Corresponding_CDS_history | T28A8.5:wp209 | ||||||||
| Corresponding_transcript | T28A8.5a.1 | ||||||||
| T28A8.5b.1 | |||||||||
| Associated_feature | WBsf994908 | ||||||||
| WBsf226030 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00019375 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00082455 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00006240 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00054374 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00082650 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1025680 | ||||||||
| Expr1035351 | |||||||||
| Expr1157921 | |||||||||
| Expr2006593 | |||||||||
| Expr2024810 | |||||||||
| Microarray_results | SMD_T28A8.5 | ||||||||
| 179004_at | |||||||||
| Aff_T28A8.5 | |||||||||
| GPL19516_CGZ0037373 | |||||||||
| GPL21109_T28A8.5 | |||||||||
| GPL3518_CE18976 | |||||||||
| GPL8673_T28A8_5P00054 | |||||||||
| GPL8673_T28A8_5P00325 | |||||||||
| Expression_cluster (117) | |||||||||
| SAGE_tag | SAGE:atggacaggt | Strand | Sense | ||||||
| Unambiguously_mapped | |||||||||
| SAGE:atggacaggtgaagctc | Strand | Sense | |||||||
| Unambiguously_mapped | |||||||||
| Interaction (38) | |||||||||
| Map_info | Positive | Positive_clone | T28A8 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||
| Interpolated_map_position | III | 21.2478 | |||||||
| Method | Gene |
