WormBase Tree Display for Gene: WBGene00011870
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| WBGene00011870 | SMap | S_parent | Sequence | T20G5 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | Sequence_name | T20G5.8 | |||||||
| Molecular_name | T20G5.8 | ||||||||
| T20G5.8.1 | |||||||||
| CE00588 | |||||||||
| Other_name | CELE_T20G5.8 | Accession_evidence | NDB | BX284603 | |||||
| Public_name | T20G5.8 | ||||||||
| DB_info | Database | AceView | gene | 3L289 | |||||
| WormQTL | gene | WBGene00011870 | |||||||
| WormFlux | gene | WBGene00011870 | |||||||
| NDB | locus_tag | CELE_T20G5.8 | |||||||
| NCBI | gene | 188660 | |||||||
| RefSeq | protein | NM_066857.7 | |||||||
| TrEMBL | UniProtAcc | Q22614 | |||||||
| UniProt_GCRP | UniProtAcc | Q22614 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:53 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Allele | WBVar01500260 | ||||||||
| WBVar01507462 | |||||||||
| WBVar01499774 | |||||||||
| WBVar00101223 | |||||||||
| WBVar00406864 | |||||||||
| WBVar00855021 | |||||||||
| WBVar00855022 | |||||||||
| WBVar01267532 | |||||||||
| WBVar01267534 | |||||||||
| WBVar01498954 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog | WBGene00142088 | Caenorhabditis brenneri | From_analysis | OMA | |||||
| WBGene00085206 | Caenorhabditis remanei | From_analysis | OMA | ||||||
| WBGene00085211 | Caenorhabditis remanei | From_analysis | OMA | ||||||
| Inparanoid_8 | |||||||||
| WormBase-Compara | |||||||||
| CSP31.g20309 | Caenorhabditis uteleia | From_analysis | WormBase-Compara | ||||||
| FL83_19536 | Caenorhabditis latens | From_analysis | WormBase-Compara | ||||||
| Paralog | WBGene00011869 | Caenorhabditis elegans | From_analysis | Inparanoid_8 | |||||
| WormBase-Compara | |||||||||
| Structured_description | Automated_description | Enriched in several structures, including ABalpapppa; ABaraapapaa; pharyngeal cell; rectal epithelial cell; and rectum based on single-cell RNA-seq and microarray studies. Is affected by several genes including daf-16; daf-2; and skn-1 based on microarray; RNA-seq; and tiling array studies. Is affected by fourteen chemicals including rotenone; Zidovudine; and allantoin based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: ShK domain-like and ShKT domain. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | T20G5.8 | |||||||
| Corresponding_transcript | T20G5.8.1 | ||||||||
| Other_sequence | CSC01049_1 | ||||||||
| FD517327.1 | |||||||||
| Associated_feature | WBsf645547 | ||||||||
| WBsf225681 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00053667 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00018932 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00035725 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00063171 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00063170 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00006425 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1023745 | ||||||||
| Expr1157222 | |||||||||
| Expr2006303 | |||||||||
| Expr2024523 | |||||||||
| Drives_construct | WBCnstr00030321 | ||||||||
| Construct_product | WBCnstr00030321 | ||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (204) | |||||||||
| Interaction (35) | |||||||||
| Map_info | Positive | Positive_clone | T20G5 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||
| Interpolated_map_position | III | 2.00897 | |||||||
| Reference | WBPaper00041771 | ||||||||
| Method | Gene |
