WormBase Tree Display for Gene: WBGene00011860

WBGene00011860 SMap: S_parent: Sequence: T20D3
  Identity: Version: 2
    Name: CGC_name: pigc-1
      Sequence_name: T20D3.8
      Molecular_name: T20D3.8
        T20D3.8.1
        CE23990
      Other_name: CELE_T20D3.8 Accession_evidence: NDB BX284604
      Public_name: pigc-1
    DB_info: Database (11)
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:53 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 11 Dec 2018 16:50:34 WBPerson1983 Name_change: CGC_name: pigc-1
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: pigc
    Allele (17)
    RNASeq_FPKM (74)
    GO_annotation: 00024450
      00024451
      00024452
      00024453
      00024454
      00024455
      00119080
      00119081
    Contained_in_operon: CEOP4328
    Ortholog (34)
    Structured_description: Automated_description: Predicted to enable glycosyltransferase activity. Predicted to be involved in GPI anchor biosynthetic process. Located in nucleus. Human ortholog(s) of this gene implicated in glycosylphosphatidylinositol biosynthesis defect 16. Is an ortholog of human PIGC (phosphatidylinositol glycan anchor biosynthesis class C). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Disease_info: Potential_model: DOID:0081223 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:8960)
  Molecular_info: Corresponding_CDS: T20D3.8
    Corresponding_transcript: T20D3.8.1
    Other_sequence: Tcol_isotig05559
      JI471222.1
      Dviv_isotig13886
      Tcol_isotig05560
      Dviv_isotig13884
      JI483361.1
      Tcol_isotig05561
      PPC07344_1
      CBC00226_1
      Tcol_isotig05562
    Associated_feature: WBsf652056
      WBsf230560
  Experimental_info: RNAi_result: WBRNAi00018905 Inferred_automatically: RNAi_primary
      WBRNAi00035704 Inferred_automatically: RNAi_primary
      WBRNAi00053617 Inferred_automatically: RNAi_primary
      WBRNAi00061888 Inferred_automatically: RNAi_primary
      WBRNAi00090859 Inferred_automatically: RNAi_primary
      WBRNAi00111231 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr9505
      Expr1023420
      Expr1035226
      Expr1157175
      Expr2006288
      Expr2024505
    Drives_construct: WBCnstr00030328
    Construct_product: WBCnstr00014070
      WBCnstr00030328
    Microarray_results (19)
    Expression_cluster: WBPaper00031040:TGF-beta_adult_downregulated
      WBPaper00032097:CGH-1-associated-mRNA
      WBPaper00033065:cyc-1(RNAi)_downregulated
      WBPaper00037055:DAF-16_binding_DNA
      WBPaper00044426:rotenone_24h_upregulated
      WBPaper00044656:tatn-1(qd182)_downregulated
      WBPaper00044736:flat_dev_expression
      WBPaper00045521:Gender_Neutral
      WBPaper00048423:LP133_LF21_upregulated
      WBPaper00048988:daf-16(mu86)_upregulated_neuron
      WBPaper00048988:neuron_expressed
      WBPaper00049545:sur-5p-jmjd-1.2(+)_downregulated
      WBPaper00050488:20C_vs_25C_regulated_N2_adult
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050990:hypodermis_expressed
      WBPaper00050990:intestine_expressed
      WBPaper00050990:pharynx_expressed
      WBPaper00051039:germline_enriched
      WBPaper00051265:F4_morc-1(tm6048)_upregulated
      WBPaper00051311:VGLN-1-interacting
      WBPaper00052884:emb-4(hc60)_downregulated
      WBPaper00053295:lin-22(icb38)_downregulated
      WBPaper00053302:zidovudine_72h_regulated
      WBPaper00053657:N2_M.humicola-infection_24hr
      WBPaper00055354:Rapamycin-Allantoin_upregulated
      WBPaper00055354:Rapamycin_upregulated
      WBPaper00055354:Rifampicin-Allantoin_upregulated
      WBPaper00055648:germline_expressed
      WBPaper00055827:pfd-6(gk493446)_upregulated
      WBPaper00056090:E.faecalis_downregulated_hpx-2(dg047)
      WBPaper00056161:male_enriched_siRNA
      WBPaper00056471:aak-1(tm1944);aak-2(ok524)_downregulated
      WBPaper00056471:S.aureus-4h_downregulated_N2
      WBPaper00056809:smn-1(ok355)_downregulated
      WBPaper00056826:SGP_biased
      WBPaper00057288:iff-1(RNAi)_upregulated_transcript
      WBPaper00058691:cfp-1(tm6369)_upregulated
      WBPaper00058691:sin-3(tm1276)_upregulated
      WBPaper00059763:neuron_expressed
      WBPaper00060683:hlh-11(ko1)_downregulated
      WBPaper00061340:Coelomocyte
      WBPaper00061340:hmc_and_homolog
      WBPaper00061340:Neuroblast_ALM_BDU
      WBPaper00061466:nath-10(icb99)_downregulated
      WBPaper00061527:F43G9.13-F33D11.12
      WBPaper00064088:Day-1-adult_vs_L4_upregulated_fem-3(q20)
      WBPaper00064088:Day-3-adult_vs_L4_upregulated_fem-3(q20)
      WBPaper00064716:paraquat_upregulated
      WBPaper00065841:22_0
      WBPaper00065975:P-body_vs_oocyte_enriched
      WBPaper00065975:P-body_vs_WholeAnimal_enriched
      WBPaper00065993:glp-1(e2141)_downregulated
      WBPaper00066110:tetraploid_vs_diploid_downregulated
      WBPaper00066146:germline-inx-14(RNAi)_downregulated_PA14
      cgc4489_group_2
      WBPaper00025141:N2_Expressed_Genes
      WBPaper00026929:sir-2.1_overexpression_regulated
      WBPaper00026980:intestine_enriched
      WBPaper00031003:24hr_muscle_depleted
      WBPaper00031003:total_muscle_depleted
      WBPaper00031252:AIN-1_IP_enriched
      WBPaper00031252:AIN-2_IP_enriched
      WBPaper00035084:L1_enriched_AIN-2_IP
      WBPaper00035905:FBF-1_Associated
      WBPaper00036123:Atrazine_regulated
      WBPaper00036286:Pattern_F
      WBPaper00037611:RNP-8-associated
      WBPaper00038231:Cry5B_1.5-fold_upregulated
      WBPaper00040963:TA300_down
      WBPaper00041606:CE_X.nematophila_regulated
      WBPaper00041939:EtBr-exposed_vs_UVC-exposed_51h
      WBPaper00042331:a-SWCNTs_downregulated
      WBPaper00045263:0.1mM-paraquat_upregulated
      WBPaper00048989:N2_rapamycin_downregulated
      [cgc5767]:cluster_6
      [cgc5767]:expression_class_M
      [cgc5767]:expression_class_MD
      [cgc5767]:expression_class_MD_pd(41_min)
      [cgc5767]:expression_class_MD_pd(53_min)
      [cgc5767]:expression_class_SM
      [cgc5767]:expression_class_SMD
      [cgc6390]:Cluster_E
      [cgc6390]:intrinsic
    Interaction (27)
  Map_info: Map: IV Position: 4.18829
    Positive: Positive_clone: T20D3 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00038444
    WBPaper00038491
    WBPaper00055090
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene