WormBase Tree Display for Gene: WBGene00011841

WBGene00011841 SMap: S_parent: Sequence: T19C9
  Identity: Version: 2
    Name: CGC_name: scl-25 Person_evidence: WBPerson261
      Sequence_name: T19C9.5
      Molecular_name: T19C9.5
        T19C9.5.1
        CE16422
      Other_name: CELE_T19C9.5 Accession_evidence: NDB BX284605
      Public_name: scl-25
    DB_info: Database: AceView gene 5R691
        WormQTL gene WBGene00011841
        WormFlux gene WBGene00011841
        NDB locus_tag CELE_T19C9.5
        Panther gene CAEEL|WormBase=WBGene00011841|UniProtKB=O45790
          family PTHR10334
        NCBI gene 188600
        RefSeq protein NM_074963.4
        TrEMBL UniProtAcc O45790
        UniProt_GCRP UniProtAcc O45790
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:53 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 07 Nov 2007 11:51:23 WBPerson2970 Name_change: CGC_name: scl-25
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: scl
    Allele (171)
    RNASeq_FPKM (74)
    GO_annotation: 00035230
    Ortholog: chrV_pilon.g17405 Caenorhabditis elegans From_analysis: WormBase-Compara
    Paralog (31)
    Structured_description: Automated_description: Predicted to be located in extracellular space. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: T19C9.5
    Corresponding_transcript: T19C9.5.1
  Experimental_info: RNAi_result: WBRNAi00112660 Inferred_automatically: RNAi_primary
      WBRNAi00018838 Inferred_automatically: RNAi_primary
      WBRNAi00053524 Inferred_automatically: RNAi_primary
      WBRNAi00018835 Inferred_automatically: RNAi_primary
      WBRNAi00035665 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1157094
      Expr2015635
      Expr2033870
    Drives_construct: WBCnstr00030341
    Construct_product: WBCnstr00030341
    Microarray_results (13)
    Expression_cluster: WBPaper00032528:L3_depleted
      WBPaper00037682:sma-2_downregulated
      WBPaper00037950:A-class-motor-neurons_L1-larva_expressed
      WBPaper00037950:all-neurons_embryo_enriched
      WBPaper00037950:all-neurons_L1-larva_expressed
      WBPaper00037950:AVA-neuron_L1-larva_expressed
      WBPaper00037950:AVE-neuron_L1-larva_expressed
      WBPaper00037950:bodywall-muscle_L2-larva_expressed
      WBPaper00037950:CEP-sheath-cells_Day1-adult_expressed
      WBPaper00037950:coelomocytes_L1-larva_expressed
      WBPaper00037950:coelomocytes_L2-larva_expressed
      WBPaper00037950:dopaminergic-neurons_L1-larva_expressed
      WBPaper00037950:GABAergic-motor-neurons_embryo_enriched
      WBPaper00037950:GABAergic-motor-neurons_L1-larva_expressed
      WBPaper00037950:GABAergic-motor-neurons_L2-larva_expressed
      WBPaper00037950:glr-1(+)-neurons_L2-larva_expressed
      WBPaper00037950:hypodermis_L1-larva_expressed
      WBPaper00037950:intestine_L1-larva_expressed
      WBPaper00037950:pharyngeal-muscle_L1-larva_expressed
      WBPaper00038438:P.lumniescens_24hr_upregulated_TilingArray
      WBPaper00038438:S.marcescens_24hr_downregulated_TilingArray
      WBPaper00044316:HgCl2_20uM_upregulated
      WBPaper00044578:reduced-humidity_downregulated_microarray
      WBPaper00045257:bar-1(ga80)_upregulated
      WBPaper00045390:tunicamycin_upregulated
      WBPaper00045571:germline-ablation_upregulated
      WBPaper00045774:clk-1_downregulated
      WBPaper00048988:daf-2(e1370)_daf-16(mu86)_downregulated_neuron
      WBPaper00048988:daf-2(e1370)_downregulated_neuron
      WBPaper00048988:neuron_expressed
      WBPaper00050231:male_enriched
      WBPaper00050370:dpy-21(e428)_L3_upregulated
      WBPaper00050488:20C_vs_25C_regulated_mir-34(gk437)_adult
      WBPaper00050488:20C_vs_25C_regulated_N2_adult
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_adult_25C
      WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C
      WBPaper00050488:N2_vs_mir-34(gk437)_regulated_dauer_20C
      WBPaper00050726:OsmoticStress_regulated_NoFood
      WBPaper00053606:N2_vs_elt-2(ca15);elt-7(tm840)_upregulated
      WBPaper00053606:N2_vs_elt-2(ca15)_upregulated
      WBPaper00054191:H3.3(null)_L1_downregulated
      WBPaper00055013:hmg-3(bar24)_upregulated
      WBPaper00055354:eat-2(ad1116)_downregulated
      WBPaper00055354:Rapamycin-Allantoin_upregulated
      WBPaper00055354:Rapamycin-Metformin_upregulated
      WBPaper00055386:eat-2(ad465)_downregulated
      WBPaper00055626:pry-1(mu38)_upregulated
      WBPaper00055648:male-seminal-vesicle_expressed
      WBPaper00055648:male-vas-deferens_expressed
      WBPaper00058711:wdr-5(ok1417)_upregulated
      WBPaper00058725:sftb-1(cer6)_upregulated
      WBPaper00060434:pH4.33_vs_pH6.33_uprgulated
      WBPaper00060764:swsn-1(os22ts)_downregulated
      WBPaper00060811:L1_vs_adult_upregulated_neural
      WBPaper00060921:tbh-1(ok1196)_downregulated
      WBPaper00060921:tph-1(mg280)_downregulated
      WBPaper00061274:hypergravity_15xg_downregulated
      WBPaper00061341:28C_24h_upregulated
      WBPaper00061341:28C_48h_upregulated
      WBPaper00061424:Diet_MYb120_upregulated
      WBPaper00061527:clec-13-F35E8.10
      WBPaper00061530:nhr-49(e2144)_downregulated
      WBPaper00061590:CGP37157_downregulated
      WBPaper00061753:csr-1(tor159)_downregulated_20C
      WBPaper00061753:csr-1(tor159)_downregulated_25C
      WBPaper00061902:camt-1(ok515)_regulated_RMG
      WBPaper00061902:camt-1(ok515)_regulated_URX-AQR-PQR
      WBPaper00062197:mec-8_upregulated
      WBPaper00062325:muscle_depleted_coding-RNA
      WBPaper00062497:xpf-1(tm2842)_upregulated
      WBPaper00064494:postdauer_upregulated_WholeAnimal
      WBPaper00064502:nhr-23(kry61);spe-44(fx110)_downregulated
      WBPaper00064502:nhr-23(kry61)_downregulated
      WBPaper00064509:static-magnetic-field_downregulated
      WBPaper00065658:S.ven-metabolite_upregulated_Day5
      WBPaper00065746:eat-2(ad1113)_upregulated
      WBPaper00065841:41_0
      WBPaper00065841:41_1
      WBPaper00065841:41_2
      WBPaper00065841:93_0
      WBPaper00065975:P-body_vs_WholeAnimal_depleted
      WBPaper00065993:glp-1(e2141)_upregulated
      WBPaper00066110:Cisplatin_downregulated_tetraploid
      WBPaper00066110:Doxorubicin_downregulated_tetraploid
      WBPaper00066110:tetraploid_vs_diploid_upregulated
      WBPaper00066146:germline-inx-14(RNAi)_upregulated_PA14
      cgc4489_group_14
      WBPaper00026929:Resveratrol_regulated_daf-16
      WBPaper00026929:sir-2.1_overexpression_regulated
      WBPaper00026952:class_E
      WBPaper00040426:CYD-1_CDK-4_upregulated
      WBPaper00041606:CE_X.nematophila_regulated
      WBPaper00041609:hpl-1_hpl-2_upregulated
      WBPaper00045673:colistin_downregulated
      WBPaper00046548:dafachronic-acid_downregulated
      WBPaper00047070:N2_UV_upregulated
      WBPaper00047070:xpa-1_UV_upregulated
      WBPaper00048989:eat-2(ad465)_rapamycin_upregulated
      WBPaper00053236:Starvation_regulated_N2
      [cgc6390]:male_soma-enriched
    Interaction: WBInteraction000100991
      WBInteraction000150001
      WBInteraction000172489
      WBInteraction000188212
      WBInteraction000192737
      WBInteraction000204874
      WBInteraction000212493
      WBInteraction000214067
      WBInteraction000215052
      WBInteraction000227711
      WBInteraction000257310
      WBInteraction000265421
      WBInteraction000267500
      WBInteraction000281021
      WBInteraction000281560
      WBInteraction000288848
      WBInteraction000305657
      WBInteraction000307137
      WBInteraction000315558
      WBInteraction000321263
      WBInteraction000337055
      WBInteraction000340305
      WBInteraction000352999
      WBInteraction000365206
      WBInteraction000365509
      WBInteraction000373945
      WBInteraction000376523
      WBInteraction000389552
      WBInteraction000400152
      WBInteraction000412465
      WBInteraction000416140
      WBInteraction000425641
      WBInteraction000436157
      WBInteraction000438137
      WBInteraction000440269
      WBInteraction000443875
      WBInteraction000457057
  Map_info: Map: V Position: 12.8387 Error: 0.000765
    Positive: Positive_clone: T19C9 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene