WormBase Tree Display for CDS: T19C9.5
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| T19C9.5 | Evidence | Inferred_automatically | make_isoforms.pl | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | T19C9 | |||
| Structure | Source_exons | 1 | 192 | |||
| 236 | 370 | |||||
| 426 | 625 | |||||
| 672 | 783 | |||||
| DB_info | Database | TrEMBL | UniProtAcc | O45790 | ||
| UniProt | UniProtAcc | O45790 | ||||
| UniProt_GCRP | UniProtAcc | O45790 | ||||
| AlphaFold | entry | O45790 | ||||
| NCBI_protein | GI_number | GI:3879974 | ||||
| Protein_id | CHROMOSOME_V | CAB07484 | 1 | |||
| DB_remark | SCL-25 protein; contains similarity to Pfam domain PF00188 (Cysteine-rich secretory protein family); contains similarity to Interpro domains IPR014044 (CAP domain), IPR035940 (CAP superfamily) | |||||
| Origin | From_laboratory | HX | ||||
| Species | Caenorhabditis elegans | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Confirmed | |||||
| Visible | Gene | WBGene00011841 | ||||
| Corresponding_transcript | T19C9.5.1 | |||||
| Corresponding_protein | CE16422 | |||||
| Corresponding_PCR_product | cenix:212-b7 | |||||
| mv_T19C9.5 | ||||||
| sjj_T19C9.5 | ||||||
| Corresponding_oligo_set | 179372_at | |||||
| A_12_P106803 | ||||||
| Aff_T19C9.5 | ||||||
| GPL19516_CGZ0035531 | ||||||
| GPL21109_T19C9.5 | ||||||
| GPL3518_CE16422 | ||||||
| GPL8304_CE_WBGene00011841_A | ||||||
| GPL8673_T19C9_5P00035 | ||||||
| GPL8673_T19C9_5P00344 | ||||||
| GPL8673_T19C9_5P00482 | ||||||
| Matching_cDNA | male_Nanopore_Roach_108597 | Inferred_automatically | transcript_builder.pl | |||
| male_Nanopore_Roach_111303 | Inferred_automatically | transcript_builder.pl | ||||
| male_Nanopore_Roach_2125 | ||||||
| YA_Nanopore_Li_128440 | Inferred_automatically | transcript_builder.pl | ||||
| OSTF162H6_1 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Li_100122 | Inferred_automatically | transcript_builder.pl | ||||
| OSTR162H6_1 | Inferred_automatically | transcript_builder.pl | ||||
| RNAi_result | WBRNAi00112660 | |||||
| WBRNAi00018838 | ||||||
| WBRNAi00053524 | ||||||
| WBRNAi00035665 | ||||||
| Microarray_results (11) | ||||||
| Brief_identification | SCP domain-containing protein | Accession_evidence | UniProt | TR:O45790 | ||
| RNASeq_FPKM (74) | ||||||
| Method | curated |
