WormBase Tree Display for Gene: WBGene00011841

WBGene00011841 SMap: S_parent: Sequence: T19C9
  Identity: Version: 2
    Name: CGC_name: scl-25 Person_evidence: WBPerson261
      Sequence_name: T19C9.5
      Molecular_name: T19C9.5
        T19C9.5.1
        CE16422
      Other_name: CELE_T19C9.5 Accession_evidence: NDB BX284605
      Public_name: scl-25
    DB_info: Database: AceView gene 5R691
        WormQTL gene WBGene00011841
        WormFlux gene WBGene00011841
        NDB locus_tag CELE_T19C9.5
        Panther gene CAEEL|WormBase=WBGene00011841|UniProtKB=O45790
          family PTHR10334
        NCBI gene 188600
        RefSeq protein NM_074963.4
        TrEMBL UniProtAcc O45790
        UniProt_GCRP UniProtAcc O45790
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:53 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 07 Nov 2007 11:51:23 WBPerson2970 Name_change: CGC_name: scl-25
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: scl
    Allele (171)
    RNASeq_FPKM (74)
    GO_annotation: 00035230
    Ortholog: chrV_pilon.g17405 Caenorhabditis elegans From_analysis: WormBase-Compara
    Paralog (31)
    Structured_description: Automated_description: Predicted to be located in extracellular space. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: T19C9.5
    Corresponding_transcript: T19C9.5.1
  Experimental_info: RNAi_result: WBRNAi00112660 Inferred_automatically: RNAi_primary
      WBRNAi00018838 Inferred_automatically: RNAi_primary
      WBRNAi00053524 Inferred_automatically: RNAi_primary
      WBRNAi00018835 Inferred_automatically: RNAi_primary
      WBRNAi00035665 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1157094
      Expr2015635
      Expr2033870
    Drives_construct: WBCnstr00030341
    Construct_product: WBCnstr00030341
    Microarray_results (13)
    Expression_cluster: WBPaper00032528:L3_depleted
      WBPaper00037682:sma-2_downregulated
      WBPaper00037950:A-class-motor-neurons_L1-larva_expressed
      WBPaper00037950:all-neurons_embryo_enriched
      WBPaper00037950:all-neurons_L1-larva_expressed
      WBPaper00037950:AVA-neuron_L1-larva_expressed
      WBPaper00037950:AVE-neuron_L1-larva_expressed
      WBPaper00037950:bodywall-muscle_L2-larva_expressed
      WBPaper00037950:CEP-sheath-cells_Day1-adult_expressed
      WBPaper00037950:coelomocytes_L1-larva_expressed
      WBPaper00037950:coelomocytes_L2-larva_expressed
      WBPaper00037950:dopaminergic-neurons_L1-larva_expressed
      WBPaper00037950:GABAergic-motor-neurons_embryo_enriched
      WBPaper00037950:GABAergic-motor-neurons_L1-larva_expressed
      WBPaper00037950:GABAergic-motor-neurons_L2-larva_expressed
      WBPaper00037950:glr-1(+)-neurons_L2-larva_expressed
      WBPaper00037950:hypodermis_L1-larva_expressed
      WBPaper00037950:intestine_L1-larva_expressed
      WBPaper00037950:pharyngeal-muscle_L1-larva_expressed
      WBPaper00038438:P.lumniescens_24hr_upregulated_TilingArray
      WBPaper00038438:S.marcescens_24hr_downregulated_TilingArray
      WBPaper00044316:HgCl2_20uM_upregulated
      WBPaper00044578:reduced-humidity_downregulated_microarray
      WBPaper00045257:bar-1(ga80)_upregulated
      WBPaper00045390:tunicamycin_upregulated
      WBPaper00045571:germline-ablation_upregulated
      WBPaper00045774:clk-1_downregulated
      WBPaper00048988:daf-2(e1370)_daf-16(mu86)_downregulated_neuron
      WBPaper00048988:daf-2(e1370)_downregulated_neuron
      WBPaper00048988:neuron_expressed
      WBPaper00050231:male_enriched
      WBPaper00050370:dpy-21(e428)_L3_upregulated
      WBPaper00050488:20C_vs_25C_regulated_mir-34(gk437)_adult
      WBPaper00050488:20C_vs_25C_regulated_N2_adult
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_adult_25C
      WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C
      WBPaper00050488:N2_vs_mir-34(gk437)_regulated_dauer_20C
      WBPaper00050726:OsmoticStress_regulated_NoFood
      WBPaper00053606:N2_vs_elt-2(ca15);elt-7(tm840)_upregulated
      WBPaper00053606:N2_vs_elt-2(ca15)_upregulated
      WBPaper00054191:H3.3(null)_L1_downregulated
      WBPaper00055013:hmg-3(bar24)_upregulated
      WBPaper00055354:eat-2(ad1116)_downregulated
      WBPaper00055354:Rapamycin-Allantoin_upregulated
      WBPaper00055354:Rapamycin-Metformin_upregulated
      WBPaper00055386:eat-2(ad465)_downregulated
      WBPaper00055626:pry-1(mu38)_upregulated
      WBPaper00055648:male-seminal-vesicle_expressed
      WBPaper00055648:male-vas-deferens_expressed
      WBPaper00058711:wdr-5(ok1417)_upregulated
      WBPaper00058725:sftb-1(cer6)_upregulated
      WBPaper00060434:pH4.33_vs_pH6.33_uprgulated
      WBPaper00060764:swsn-1(os22ts)_downregulated
      WBPaper00060811:L1_vs_adult_upregulated_neural
      WBPaper00060921:tbh-1(ok1196)_downregulated
      WBPaper00060921:tph-1(mg280)_downregulated
      WBPaper00061274:hypergravity_15xg_downregulated
      WBPaper00061341:28C_24h_upregulated
      WBPaper00061341:28C_48h_upregulated
      WBPaper00061424:Diet_MYb120_upregulated
      WBPaper00061527:clec-13-F35E8.10
      WBPaper00061530:nhr-49(e2144)_downregulated
      WBPaper00061590:CGP37157_downregulated
      WBPaper00061753:csr-1(tor159)_downregulated_20C
      WBPaper00061753:csr-1(tor159)_downregulated_25C
      WBPaper00061902:camt-1(ok515)_regulated_RMG
      WBPaper00061902:camt-1(ok515)_regulated_URX-AQR-PQR
      WBPaper00062197:mec-8_upregulated
      WBPaper00062325:muscle_depleted_coding-RNA
      WBPaper00062497:xpf-1(tm2842)_upregulated
      WBPaper00064494:postdauer_upregulated_WholeAnimal
      WBPaper00064502:nhr-23(kry61);spe-44(fx110)_downregulated
      WBPaper00064502:nhr-23(kry61)_downregulated
      WBPaper00064509:static-magnetic-field_downregulated
      WBPaper00065658:S.ven-metabolite_upregulated_Day5
      WBPaper00065746:eat-2(ad1113)_upregulated
      WBPaper00065841:41_0
      WBPaper00065841:41_1
      WBPaper00065841:41_2
      WBPaper00065841:93_0
      WBPaper00065975:P-body_vs_WholeAnimal_depleted
      WBPaper00065993:glp-1(e2141)_upregulated
      WBPaper00066110:Cisplatin_downregulated_tetraploid
      WBPaper00066110:Doxorubicin_downregulated_tetraploid
      WBPaper00066110:tetraploid_vs_diploid_upregulated
      WBPaper00066146:germline-inx-14(RNAi)_upregulated_PA14
      cgc4489_group_14
      WBPaper00026929:Resveratrol_regulated_daf-16
      WBPaper00026929:sir-2.1_overexpression_regulated
      WBPaper00026952:class_E
      WBPaper00040426:CYD-1_CDK-4_upregulated
      WBPaper00041606:CE_X.nematophila_regulated
      WBPaper00041609:hpl-1_hpl-2_upregulated
      WBPaper00045673:colistin_downregulated
      WBPaper00046548:dafachronic-acid_downregulated
      WBPaper00047070:N2_UV_upregulated
      WBPaper00047070:xpa-1_UV_upregulated
      WBPaper00048989:eat-2(ad465)_rapamycin_upregulated
      WBPaper00053236:Starvation_regulated_N2
      [cgc6390]:male_soma-enriched
    Interaction (37)
  Map_info: Map: V Position: 12.8387 Error: 0.000765
    Positive: Positive_clone: T19C9 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene