WormBase Tree Display for Gene: WBGene00011817

WBGene00011817 SMap: S_parent: Sequence: CHROMOSOME_III
  Identity: Version: 1
    Name: Sequence_name: T16H12.9
      Molecular_name: T16H12.9
        T16H12.9.1
        CE41453
      Other_name: CELE_T16H12.9 Accession_evidence: NDB BX284603
      Public_name: T16H12.9
    DB_info: Database: AceView gene 3L199
        WormQTL gene WBGene00011817
        WormFlux gene WBGene00011817
        NDB locus_tag CELE_T16H12.9
        Panther gene CAEEL|WormBase=WBGene00011817|UniProtKB=P34572
          family PTHR33995
        NCBI gene 188562
        RefSeq protein NM_066843.4
        SwissProt UniProtAcc P34572
        TREEFAM TREEFAM_ID TF316826
        UniProt_GCRP UniProtAcc P34572
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:53 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
    Status: Live
  Gene_info: Biotype: SO:0001217
    Allele: WBVar01500260
      WBVar01918691
      WBVar00237105
      WBVar01332460
      WBVar01332462
      WBVar01904074
      WBVar01904075
      WBVar00216295
      WBVar01409191
      WBVar01409192
      WBVar00250318
      WBVar01499774
      WBVar00406663
      WBVar00406664
      WBVar00406665
      WBVar00406666
      WBVar00406667
      WBVar00406668
      WBVar01267450
      WBVar00178385
      WBVar01267452
      WBVar00854467
      WBVar00854468
      WBVar00854469
      WBVar00854470
      WBVar00854471
      WBVar00854472
      WBVar00854473
      WBVar00854474
      WBVar00854475
      WBVar00854476
      WBVar00854477
      WBVar00854478
      WBVar00266405
      WBVar00854479
      WBVar00854480
      WBVar01499666
      WBVar01499667
      WBVar01498954
    RNASeq_FPKM (74)
    Ortholog (20)
    Paralog: WBGene00004124 Caenorhabditis elegans From_analysis: Panther
      WBGene00009099 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00009561 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00044582 Caenorhabditis elegans From_analysis: TreeFam
            Inparanoid_8
            Panther
            WormBase-Compara
      WBGene00219375 Caenorhabditis elegans From_analysis: Panther
      WBGene00022386 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
    Structured_description: Automated_description: Enriched in excretory cell; intestine; neuronal sheath cell; and neurons based on tiling array; RNA-seq; single-cell RNA-seq; and microarray studies. Is affected by several genes including daf-16; daf-2; and eat-2 based on microarray and RNA-seq studies. Is affected by six chemicals including rotenone; antimycin; and Cadmium Chloride based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domain: Cystine-knot cytokine. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: T16H12.9
    Corresponding_CDS_history: T16H12.9:wp59
      T16H12.9:wp179
    Corresponding_transcript: T16H12.9.1
    Other_sequence: JI172934.1
      Tcol_isotig13736
      Oden_isotig29624
      Acan_isotig00331
      PPC13733_1
    Associated_feature: WBsf659472
      WBsf225661
  Experimental_info: RNAi_result: WBRNAi00070887 Inferred_automatically: RNAi_primary
      WBRNAi00097727 Inferred_automatically: RNAi_primary
      WBRNAi00053440 Inferred_automatically: RNAi_primary
      WBRNAi00097728 Inferred_automatically: RNAi_primary
      WBRNAi00070886 Inferred_automatically: RNAi_primary
      WBRNAi00018787 Inferred_automatically: RNAi_primary
      WBRNAi00006407 Inferred_automatically: RNAi_primary
      WBRNAi00021826 Inferred_automatically: RNAi_primary
      WBRNAi00097731 Inferred_automatically: RNAi_primary
      WBRNAi00099093 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1018641
      Expr1157012
      Expr2006226
      Expr2024444
    Drives_construct: WBCnstr00030361
    Construct_product: WBCnstr00030361
    Microarray_results (17)
    Expression_cluster: WBPaper00030922:glycosylated_protein
      WBPaper00031040:TGF-beta_adult_upregulated
      WBPaper00033070:Elbe_downregulated
      WBPaper00037950:A-class-motor-neurons_L2-larva_expressed
      WBPaper00037950:CEP-sheath-cells_Day1-adult_expressed
      WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
      WBPaper00037950:dopaminergic-neurons_larva_enriched
      WBPaper00037950:excretory-cell_larva_enriched
      WBPaper00037950:excretory-cell_larva_SelectivelyEnriched
      WBPaper00037950:GABAergic-motor-neurons_larva_SelectivelyEnriched
      WBPaper00037950:germline-precursors_blastula-embryo_expressed
      WBPaper00037950:hypodermis_L3-L4-larva_expressed
      WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed
      WBPaper00041071:spe-44_upregulated
      WBPaper00042215:wdr-23(tm1817)_upregulated
      WBPaper00042561:smgl-1(RNAi)_upregulated
      WBPaper00044037:eat-2_upregulated
      WBPaper00044426:rotenone_24h_upregulated
      WBPaper00044736:oscillating_dev_expression
      WBPaper00045316:prg-1_upregulated_L3
      WBPaper00045774:clk-1_upregulated
      WBPaper00046497:B.thuringiensis_0.1mix_upregulated_6h
      WBPaper00046497:B.thuringiensis_0.1mix_upregulated_12h
      WBPaper00046497:B.thuringiensis_0.5mix_upregulated_6h
      WBPaper00046497:B.thuringiensis_0.5mix_upregulated_12h
      WBPaper00047131:daf-2(e1370)_upregulated_hel-1(gk148684)-background
      WBPaper00047131:daf-2(e1370)_upregulated_N2-background
      WBPaper00049489:AMsh-glia_enriched
      WBPaper00049498:npr-1(ur89)_regulated_1
      WBPaper00049736:daf-2(e1370)_upregulated_15deg-then-25deg(12hr)
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C
      WBPaper00050488:N2_vs_mir-34(gk437)_regulated_dauer_20C
      WBPaper00050488:N2_vs_mir-34(OverExpression)_regulated_dauer_20C
      WBPaper00050726:OsmoticStress_regulated_Food
      WBPaper00050726:starvation_regulated_LowSalt
      WBPaper00050801:DAF-16_dauer_regulome
      WBPaper00051558:aging_regulated
      WBPaper00052884:emb-4(hc60)_upregulated
      WBPaper00053094:adr-2(ok735)_neuron_upregulated
      WBPaper00053184:sma-2(rax5)_upregulated
      WBPaper00053184:sma-4(rax3)_upregulated
      WBPaper00053388:dauer_regulated_Cluster2
      WBPaper00053664:ins-11(tm1053)_downregulated
      WBPaper00053810:clk-1(qm30)_upregulated
      WBPaper00053810:daf-2(e1370)_upregulated
      WBPaper00053810:isp-1(qm150)_upregulated
      WBPaper00053810:nuo-6(qm200)_upregulated
      WBPaper00054872:egl-9(sa307)_upregulated
      WBPaper00055060:flr-1(RNAi)_upregulated
      WBPaper00055386:daf-2(e1370)_upregulated
      WBPaper00055482:pmt-2(RNAi)_upregulated
      WBPaper00055827:daf-2(e1370)_upregulated
      WBPaper00055862:antimycin_damt-1(gk961032)_regulated
      WBPaper00055941:nuo-6(qm200);atfs-1(gk3094)_upregulated
      WBPaper00055941:nuo-6(qm200)_upregulated
      WBPaper00055971:nhl-2(ok818)_25C_downregulated
      WBPaper00056090:E.faecalis_upregulated_hpx-2(dg047)
      WBPaper00056090:E.faecalis_upregulated_N2
      WBPaper00056161:male_enriched_siRNA
      WBPaper00056290:hsp-6(mg585)_upregulated
      WBPaper00056471:aak-1(tm1944);aak-2(ok524)_upregulated
      WBPaper00057041:spc-1(cas971)_downregulated
      WBPaper00057041:unc-70(cas983)_downregulated
      WBPaper00057068:Cadmium_upregulated
      WBPaper00057068:ints-4(RNAi)_upregulated
      WBPaper00057143:ztf-11(RNAi)_upregulated
      WBPaper00058598:mex-1(or286)_downregulated
      WBPaper00058948:PA14_downregulated
      WBPaper00059117:B.subtilis_upregulated
      WBPaper00059253:stearic-acid_upregulated
      WBPaper00059253:sucrose_stearic-acid_upregulated
      WBPaper00059253:sucrose_upregulated
      WBPaper00059328:mrps-5(RNAi)_upregulated_mRNA
      WBPaper00059537:ngn-1(ok2200)_upregulated
      WBPaper00059664:srbc-48(ac23)_upregulated
      WBPaper00060273:isp-1(qm150)_upregulated
      WBPaper00060358:B.thuringiensis_pathogen_regulated_N2
      WBPaper00060399:pqm-1(ok485)_upregulated_CoCl2_6hr
      WBPaper00060909:atfs-1(cmh15)_downregulated
      WBPaper00061081:E.faecalis_upregulated_N2
      WBPaper00061081:E.faecalis_upregulated_skpo-1(ok1640)
      WBPaper00061274:hypergravity_15xg_downregulated
      WBPaper00061274:microgravity_downregulated
      WBPaper00061340:Excretory_cell
      WBPaper00061341:28C_24h_upregulated
      WBPaper00061341:28C_48h_upregulated
      WBPaper00061424:Diet_MYb120_upregulated
      WBPaper00061479:hda-1(ne4752)_upregulated
      WBPaper00061527:T16H12.9-kin-9_20752
      WBPaper00061651:CEPsh_enriched
      WBPaper00061651:PHsh_enriched
      WBPaper00061995:mter-4(syb3662syb3403)_downregulated
      WBPaper00062159:hda-2(ok1479)_upregulated
      WBPaper00062325:muscle_depleted_coding-RNA
      WBPaper00062440:crh-1(n3315)_downregulated
      WBPaper00062585:hlh-26(ok1453)_upregulated_E.faecium
      WBPaper00064088:Day-1-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
      WBPaper00064088:Day-1-adult_vs_L4_downregulated_fem-3(q20)
      WBPaper00064088:Day-1-adult_vs_L4_downregulated_glp-1(e2141)
      WBPaper00064088:Day-3-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
      WBPaper00064088:Day-3-adult_vs_L4_downregulated_fem-3(q20)
      WBPaper00064306:Agaro-oligosaccharides_upregulated
      WBPaper00064473:ets-4(rrr16)_upregulated
      WBPaper00064637:cox-5B(RNAi)_upregulated
      WBPaper00064721:fasn-1(g14)_downregulated_starved
      WBPaper00064871:hypoxia_downregulated_F1
      WBPaper00065074:glna(-)_upregulated
      WBPaper00065096:25C_vs_20C_downregulated
      WBPaper00065096:npr-8(ok1439)_upregulated_Day1_25C
      WBPaper00065841:5_0
      WBPaper00065841:9_0
      WBPaper00065841:9_1
      WBPaper00065841:9_2
      WBPaper00065841:15_0
      WBPaper00065841:27_0
      WBPaper00065841:37_0
      WBPaper00065841:45_0
      WBPaper00065841:79_1
      WBPaper00065841:141_0
      WBPaper00065975:P-body_vs_WholeAnimal_depleted
      WBPaper00065993:glp-1(e2141)_upregulated
      WBPaper00066062:xrep-4(lax137)_upregulated
      WBPaper00066110:Cisplatin_upregulated_tetraploid
      cgc4489_group_18
      WBPaper00026929:sir-2.1_overexpression_regulated
      WBPaper00026980:intestine_enriched
      WBPaper00032948:StarveUp2
      WBPaper00035227:heat_shock_regulated
      WBPaper00038172:tax-6null_up_regulated
      WBPaper00040821:Au-NP_regulated
      WBPaper00041939:control_vs_EtBr-exposed_48h
      WBPaper00041939:control_vs_UVC-EtBr-exposed_48h
      WBPaper00041939:control_vs_UVC-EtBr-exposed_51h
      WBPaper00041939:EtBr-exposed_vs_UVC-exposed_48h
      WBPaper00041939:UVC-EtBr-exposed_vs_EtBr-exposed_51h
      WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_48h
      WBPaper00047070:N2_starvation_upregulated
      WBPaper00047070:xpa-1_UV_upregulated
      WBPaper00048637:lin-35(n745)_starvation_downregulated
      WBPaper00053236:Starvation_regulated_GR1307
      WBPaper00053236:Starvation_regulated_N2
      WBPaper00056330:mrps-5(RNAi)_upregulated
      [cgc6390]:mixed_oogenesis-somatic
    Interaction (24)
  Map_info: Positive: Positive_clone: T16H12 Inferred_automatically: From sequence, transcript, pseudogene data
    Interpolated_map_position: III 1.83204
  Reference: WBPaper00025094
    WBPaper00034745
  Method: Gene