WormBase Tree Display for Gene: WBGene00009561
expand all nodes | collapse all nodes | view schema
| WBGene00009561 | SMap | S_parent | Sequence | F39D8 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | Sequence_name | F39D8.3 | |||||||
| Molecular_name (13) | |||||||||
| Other_name | CELE_F39D8.3 | Accession_evidence | NDB | BX284606 | |||||
| Public_name | F39D8.3 | ||||||||
| DB_info | Database | AceView | gene | XQ43 | |||||
| WormQTL | gene | WBGene00009561 | |||||||
| WormFlux | gene | WBGene00009561 | |||||||
| NDB | locus_tag | CELE_F39D8.3 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00009561|UniProtKB=K8ES61 | |||||||
| family | PTHR33995 | ||||||||
| NCBI | gene | 181632 | |||||||
| RefSeq | protein | NM_001277050.1 | |||||||
| NM_001277051.1 | |||||||||
| NM_001381170.1 | |||||||||
| NM_001373596.3 | |||||||||
| TrEMBL | UniProtAcc | K8ES61 | |||||||
| Q20190 | |||||||||
| K8ERP4 | |||||||||
| K8FDX8 | |||||||||
| UniProt_GCRP | UniProtAcc | K8ES61 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:50 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Allele (71) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog (27) | |||||||||
| Paralog | WBGene00004124 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WBGene00009099 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00044582 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00011817 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00219375 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WBGene00022386 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Automated_description | Enriched in several structures, including ADE sheath cell; anterior ganglion (ant); anterior hypodermis; sensory neurons; and somatic gonad precursor based on tiling array; RNA-seq; and single-cell RNA-seq studies. Is affected by several genes including daf-16; daf-2; and daf-12 based on tiling array; RNA-seq; and microarray studies. Is affected by fourteen chemicals including 1-methylnicotinamide; methylmercuric chloride; and D-glucose based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domain: Cystine-knot cytokine. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F39D8.3a | |||||||
| F39D8.3b | |||||||||
| F39D8.3c | |||||||||
| F39D8.3d | |||||||||
| Corresponding_CDS_history | F39D8.3:wp101 | ||||||||
| Corresponding_transcript | F39D8.3a.1 | ||||||||
| F39D8.3a.2 | |||||||||
| F39D8.3b.1 | |||||||||
| F39D8.3c.1 | |||||||||
| F39D8.3d.1 | |||||||||
| Other_sequence (13) | |||||||||
| Associated_feature | WBsf663637 | ||||||||
| WBsf663638 | |||||||||
| WBsf1008215 | |||||||||
| WBsf1008216 | |||||||||
| WBsf1008217 | |||||||||
| WBsf1024588 | |||||||||
| WBsf1024589 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00031987 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00046771 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00014599 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1021445 | ||||||||
| Expr1034182 | |||||||||
| Expr1150645 | |||||||||
| Expr2003498 | |||||||||
| Expr2021713 | |||||||||
| Drives_construct | WBCnstr00032103 | ||||||||
| Construct_product | WBCnstr00032103 | ||||||||
| Microarray_results (23) | |||||||||
| Expression_cluster (163) | |||||||||
| Interaction (105) | |||||||||
| Map_info | Positive | Positive_clone | F39D8 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||
| Interpolated_map_position | X | 22.6089 | |||||||
| Reference | WBPaper00064898 | ||||||||
| Method | Gene |
