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WormBase Tree Display for Gene: WBGene00009561

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Name Class

WBGene00009561SMapS_parentSequenceF39D8
IdentityVersion1
NameSequence_nameF39D8.3
Molecular_name (13)
Other_nameCELE_F39D8.3Accession_evidenceNDBBX284606
Public_nameF39D8.3
DB_infoDatabaseAceViewgeneXQ43
WormQTLgeneWBGene00009561
WormFluxgeneWBGene00009561
NDBlocus_tagCELE_F39D8.3
PanthergeneCAEEL|WormBase=WBGene00009561|UniProtKB=K8ES61
familyPTHR33995
NCBIgene181632
RefSeqproteinNM_001277050.1
NM_001277051.1
NM_001381170.1
NM_001373596.3
TrEMBLUniProtAccK8ES61
Q20190
K8ERP4
K8FDX8
UniProt_GCRPUniProtAccK8ES61
SpeciesCaenorhabditis elegans
HistoryVersion_change126 May 2004 16:54:50WBPerson1971EventImportedInitial conversion from CDS class of WS125
StatusLive
Gene_infoBiotypeSO:0001217
Allele (71)
RNASeq_FPKM (74)
Ortholog (27)
ParalogWBGene00004124Caenorhabditis elegansFrom_analysisPanther
WBGene00009099Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00044582Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00011817Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00219375Caenorhabditis elegansFrom_analysisPanther
WBGene00022386Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
Structured_descriptionAutomated_descriptionEnriched in several structures, including ADE sheath cell; anterior ganglion (ant); anterior hypodermis; sensory neurons; and somatic gonad precursor based on tiling array; RNA-seq; and single-cell RNA-seq studies. Is affected by several genes including daf-16; daf-2; and daf-12 based on tiling array; RNA-seq; and microarray studies. Is affected by fourteen chemicals including 1-methylnicotinamide; methylmercuric chloride; and D-glucose based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domain: Cystine-knot cytokine.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSF39D8.3a
F39D8.3b
F39D8.3c
F39D8.3d
Corresponding_CDS_historyF39D8.3:wp101
Corresponding_transcriptF39D8.3a.1
F39D8.3a.2
F39D8.3b.1
F39D8.3c.1
F39D8.3d.1
Other_sequence (13)
Associated_featureWBsf663637
WBsf663638
WBsf1008215
WBsf1008216
WBsf1008217
WBsf1024588
WBsf1024589
Experimental_infoRNAi_resultWBRNAi00031987Inferred_automaticallyRNAi_primary
WBRNAi00046771Inferred_automaticallyRNAi_primary
WBRNAi00014599Inferred_automaticallyRNAi_primary
Expr_patternExpr1021445
Expr1034182
Expr1150645
Expr2003498
Expr2021713
Drives_constructWBCnstr00032103
Construct_productWBCnstr00032103
Microarray_results (23)
Expression_clusterWBPaper00032031:DConiospora_upregulated_OligoArray_24h
WBPaper00037950:CEP-sheath-cells_Day1-adult_expressed
WBPaper00037950:germline-precursors_blastula-embryo_expressed
WBPaper00037950:germline-precursors_embryo_enriched
WBPaper00037950:germline-precursors_embryo_SelectivelyEnriched
WBPaper00037950:hypodermis_L3-L4-larva_expressed
WBPaper00037950:hypodermis_larva_enriched
WBPaper00037950:hypodermis_larva_SelectivelyEnriched
WBPaper00038438:D.coniospora_12hr_upregulated_RNAseq
WBPaper00038438:Harposporium_24hr_downregulated_RNAseq
WBPaper00038438:P.lumniescens_24hr_upregulated_RNAseq
WBPaper00038438:P.lumniescens_24hr_upregulated_TilingArray
WBPaper00038438:S.marcescens_24hr_upregulated_RNAseq
WBPaper00038438:S.marcescens_24hr_upregulated_TilingArray
WBPaper00042477:rsr-2(RNAi)_downregulated_TilingArray
WBPaper00044260:1-methylnicotinamide_upregulated
WBPaper00044316:CH3HgCl_7.5uM_downregulated
WBPaper00044736:oscillating_dev_expression
WBPaper00044760:somatic_specific
WBPaper00044786:emr-1(gk119)_upregulated
WBPaper00044786:emr-1(RNAi);lem-2(tm1582)_upregulated
WBPaper00045257:bar-1(ga80)_downregulated
WBPaper00045934:wrn-1(gk99)_downregulated
WBPaper00046805:csr-1(RNAi)_upregulated_Set1
WBPaper00046805:csr-1(RNAi)_upregulated_Set2
WBPaper00048690:hermaphrodite-Z1-Z4_enriched
WBPaper00048690:male-Z1-Z4_enriched
WBPaper00048988:neuron_expressed
WBPaper00049545:jmjd-3.1(+)_upregulated
WBPaper00049545:rgef-1p-jmjd-1.2(+)_upregulated
WBPaper00049545:sur-5p-jmjd-1.2(+)_upregulated
WBPaper00049635:dop-1(vs100)_upregulated
WBPaper00049920:Glucose-Diet_upregulated_hyl-2(tm2031)
WBPaper00049920:Glucose-Diet_upregulated_N2
WBPaper00050344:AFD-neuron_enriched
WBPaper00050344:PLM-neuron_enriched
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050801:DAF-12_dauer_regulome
WBPaper00050801:DAF-16_dauer_regulome
WBPaper00050801:DPY-21_dauer_regulome
WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adult
WBPaper00050990:hypodermis_expressed
WBPaper00050990:intestine_expressed
WBPaper00050990:seam_expressed
WBPaper00053295:lin-22(ot267)_upregulated
WBPaper00053302:stavudine_24h_regulated
WBPaper00053302:zidovudine_72h_regulated
WBPaper00053388:dauer_regulated_Cluster6
WBPaper00053402:cco-1(RNAi)_downregulated
WBPaper00053599:female_vs_male_upregulated
WBPaper00055013:hmg-3(bar24)_downregulated
WBPaper00055013:hmg-4(RNAi)_downregulated
WBPaper00055354:Rapamycin-Metformin_downregulated
WBPaper00055386:daf-2(e1370)_upregulated
WBPaper00055626:pry-1(mu38)_downregulated
WBPaper00055941:atfs-1(et15)_upregulated
WBPaper00055941:nuo-6(qm200)_downregulated
WBPaper00055971:nhl-2(ok818)_25C_downregulated
WBPaper00056090:E.faecalis_upregulated_hpx-2(dg047)
WBPaper00056330:glycine_downregulated
WBPaper00056443:sek-1(km4)_upregulated
WBPaper00056471:aak-1(tm1944);aak-2(ok524)_downregulated
WBPaper00056471:S.aureus-4h_downregulated_N2
WBPaper00056868:P.aeruginosa_upregulated_smallRNA
WBPaper00057068:ints-4(RNAi)_downregulated_Cadmium
WBPaper00057136:yap-1(ys38)_upregulated
WBPaper00057288:Cold_downregulated_transcript
WBPaper00058598:mex-1(or286)_upregulated
WBPaper00058598:mex-3(eu149)_upregulated
WBPaper00058598:spn-4(tm291)_upregulated
WBPaper00058948:npr-8(ok1439)_downregulated_PA14
WBPaper00058948:PA14_downregulated
WBPaper00059117:B.subtilis_upregulated
WBPaper00059231:alh-6(lax105)_L4_upregulated
WBPaper00059566:wdr-23(mac32)_upregulated
WBPaper00059664:srbc-48(ac23)_upregulated
WBPaper00059728:5ug_cholesterol_upregulated
WBPaper00059728:20ug_cholesterol_upregulated
WBPaper00059735:glucose_downregulated_lpin-1(RNAi)
WBPaper00060273:isp-1(qm150)_upregulated
WBPaper00060358:B.thuringiensis_non-pathogen_regulated_elt-2(RNAi)
WBPaper00060358:B.thuringiensis_pathogen_regulated_elt-2(RNAi)
WBPaper00060434:pH4.33_vs_pH6.33_uprgulated
WBPaper00060661:hypoxia_downregulated
WBPaper00060683:hlh-11(ko1)_upregulated
WBPaper00060811:L1_vs_adult_downregulated_neural
WBPaper00060921:tph-1(mg280)_upregulated
WBPaper00061007:HB101_upregulated
WBPaper00061007:S.aquatilis_upregulated
WBPaper00061007:X.citri_upregulated
WBPaper00061081:E.faecalis_upregulated_N2
WBPaper00061081:skpo-1(ok1640)_upregulated_OP50
WBPaper00061340:ADEsh
WBPaper00061340:AMso
WBPaper00061340:ant_arc_V
WBPaper00061340:hyp1_hyp2
WBPaper00061340:Hypodermis
WBPaper00061340:ILso
WBPaper00061424:Diet_MYb120_upregulated
WBPaper00061439:unc-30(ok613)_upregulated_P.aeruginosa-infection
WBPaper00061479:ubc-9(ne4833)_upregulated
WBPaper00061527:C38C6.3-acdh-6
WBPaper00061613:human-alpha-Synuclein(A53T)_upregulated
WBPaper00061753:csr-1(tor159)_upregulated_25C
WBPaper00061995:mter-4(syb3662syb3403)_downregulated
WBPaper00062156:jmjd-1.2(zr1010)_upregulated
WBPaper00062156:jmjd-5(zr1234)_upregulated
WBPaper00062159:hda-2(ok1479)_upregulated
WBPaper00062325:muscle_depleted_coding-RNA
WBPaper00062345:bortezomib_4h_upregulated_zip-1(jy13)
WBPaper00062585:hlh-26(ok1453)_upregulated_E.faecium
WBPaper00062590:Aging_downregulated_neuron
WBPaper00064005:starvation_downregulated_aptf-1(gk794)_mRNA
WBPaper00064005:starvation_downregulated_N2_mRNA
WBPaper00064088:Day-1-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
WBPaper00064088:Day-1-adult_vs_L4_downregulated_fem-3(q20)
WBPaper00064088:Day-1-adult_vs_L4_downregulated_glp-1(e2141)
WBPaper00064088:Day-3-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
WBPaper00064088:Day-3-adult_vs_L4_downregulated_fem-3(q20)
WBPaper00064088:Day-3-adult_vs_L4_downregulated_glp-1(e2141)
WBPaper00064130:Beta-Amyloid_24h_upregulated_mRNA
WBPaper00064306:Agaro-oligosaccharides_upregulated
WBPaper00064315:mes-3(bn199)_upregulated_EGCs
WBPaper00064494:postdauer_downregulated_WholeAnimal
WBPaper00064539:nhr-114(gk849)_downregulated
WBPaper00064728:cpl-1(W32AY35A)_upregulated
WBPaper00065096:25C_vs_20C_downregulated
WBPaper00065096:Day10_vs_Day1_downregulated
WBPaper00065581:hpk-1(pk1393)_upregulated
WBPaper00065746:eat-2(ad1113)_downregulated
WBPaper00065841:38_0
WBPaper00065841:82_1
WBPaper00065984:pals-17(syb3980)_downregulated
WBPaper00065993:glp-1(e2141)_downregulated
WBPaper00066004:tdp-1(csb38)_upregulated
WBPaper00066110:tetraploid_vs_diploid_upregulated
WBPaper00066232:hsf-1(RNAi)_upregulated_WT
cgc4489_group_23
WBPaper00025141:N2_Expressed_Genes
WBPaper00026929:Resveratrol_regulated_daf-16
WBPaper00026929:sir-2.1_overexpression_regulated
WBPaper00030985:Serratia_marcesens_upregulated
WBPaper00032948:FedUp
WBPaper00035588:alg-1(-)_upregulated
WBPaper00036130:mir-243_up_regulated
WBPaper00036286:Pattern_G
WBPaper00036375:depleted_in_PVD_OLL
WBPaper00040116:pRJ-FR.5_down_regulated
WBPaper00040858:eQTL_age_regulated_aging
WBPaper00040858:eQTL_regulated_developing
WBPaper00040876:mir-35_downregulated
WBPaper00041939:control_vs_EtBr-exposed_48h
WBPaper00041939:control_vs_UVC-EtBr-exposed_48h
WBPaper00041939:control_vs_UVC-EtBr-exposed_51h
WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_48h
WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_51h
WBPaper00042331:a-SWCNTs_downregulated
WBPaper00045673:colistin_upregulated
WBPaper00046083:pmk-1(km25)_OP50_downregulated
WBPaper00047070:N2_UV_downregulated
WBPaper00047070:xpa-1_UV_downregulated
WBPaper00056330:mrps-5(RNAi)_upregulated
Interaction (105)
Map_infoPositivePositive_cloneF39D8Inferred_automaticallyFrom sequence, transcript, pseudogene data
Interpolated_map_positionX22.6089
ReferenceWBPaper00064898
MethodGene